13 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EXO1	Exonuclease 1. (835 aa)
	LMNB1	Lamin B1; Belongs to the intermediate filament family. (586 aa)
	PXDN	Peroxidasin. (1525 aa)
	PRIMPOL	Primase and DNA directed polymerase. (554 aa)
	POLA1	DNA polymerase. (1468 aa)
	BRCA2	BRCA2 DNA repair associated. (3405 aa)
	RADX	RPA1 related single stranded DNA binding protein, X-linked. (764 aa)
	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	MUS81	MUS81 structure-specific endonuclease subunit. (552 aa)
	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (930 aa)
	ZRANB3	Zinc finger RANBP2-type containing 3. (1070 aa)
	CDC7	Cell division cycle 7. (576 aa)
	RAD52	RAD52 homolog, DNA repair protein. (416 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRCA2	EXO1	ENSCHIP00000024039	ENSCHIP00000010493	BRCA2 DNA repair associated.	Exonuclease 1.	0.944
BRCA2	GAPDH	ENSCHIP00000024039	ENSCHIP00000025974	BRCA2 DNA repair associated.	Glyceraldehyde-3-phosphate dehydrogenase.	0.641
BRCA2	MUS81	ENSCHIP00000024039	ENSCHIP00000028466	BRCA2 DNA repair associated.	MUS81 structure-specific endonuclease subunit.	0.915
BRCA2	POLA1	ENSCHIP00000024039	ENSCHIP00000016749	BRCA2 DNA repair associated.	DNA polymerase.	0.484
BRCA2	PRIMPOL	ENSCHIP00000024039	ENSCHIP00000015696	BRCA2 DNA repair associated.	Primase and DNA directed polymerase.	0.437
BRCA2	PXDN	ENSCHIP00000024039	ENSCHIP00000015493	BRCA2 DNA repair associated.	Peroxidasin.	0.511
BRCA2	RAD52	ENSCHIP00000024039	ENSCHIP00000004740	BRCA2 DNA repair associated.	RAD52 homolog, DNA repair protein.	0.907
BRCA2	RADX	ENSCHIP00000024039	ENSCHIP00000024886	BRCA2 DNA repair associated.	RPA1 related single stranded DNA binding protein, X-linked.	0.611
BRCA2	SMARCAL1	ENSCHIP00000024039	ENSCHIP00000030681	BRCA2 DNA repair associated.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.782
BRCA2	ZRANB3	ENSCHIP00000024039	ENSCHIP00000031427	BRCA2 DNA repair associated.	Zinc finger RANBP2-type containing 3.	0.744
CDC7	EXO1	ENSCHIP00000033187	ENSCHIP00000010493	Cell division cycle 7.	Exonuclease 1.	0.640
CDC7	MUS81	ENSCHIP00000033187	ENSCHIP00000028466	Cell division cycle 7.	MUS81 structure-specific endonuclease subunit.	0.433
CDC7	POLA1	ENSCHIP00000033187	ENSCHIP00000016749	Cell division cycle 7.	DNA polymerase.	0.762
CDC7	RAD52	ENSCHIP00000033187	ENSCHIP00000004740	Cell division cycle 7.	RAD52 homolog, DNA repair protein.	0.484
EXO1	BRCA2	ENSCHIP00000010493	ENSCHIP00000024039	Exonuclease 1.	BRCA2 DNA repair associated.	0.944
EXO1	CDC7	ENSCHIP00000010493	ENSCHIP00000033187	Exonuclease 1.	Cell division cycle 7.	0.640
EXO1	LMNB1	ENSCHIP00000010493	ENSCHIP00000011489	Exonuclease 1.	Lamin B1; Belongs to the intermediate filament family.	0.437
EXO1	MUS81	ENSCHIP00000010493	ENSCHIP00000028466	Exonuclease 1.	MUS81 structure-specific endonuclease subunit.	0.964
EXO1	POLA1	ENSCHIP00000010493	ENSCHIP00000016749	Exonuclease 1.	DNA polymerase.	0.904
EXO1	PRIMPOL	ENSCHIP00000010493	ENSCHIP00000015696	Exonuclease 1.	Primase and DNA directed polymerase.	0.529