23 items (Capra hircus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2BC12	Histone H2B; Belongs to the histone H2B family. (126 aa)
	H2BC11	Histone H2B; Belongs to the histone H2B family. (126 aa)
	H2BC3	Histone H2B; Belongs to the histone H2B family. (126 aa)
	SUMO4	Small ubiquitin-related modifier. (95 aa)
	RECQL5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (991 aa)
	H2BC5	Histone H2B; Belongs to the histone H2B family. (126 aa)
	H2BU1	Histone H2B; Belongs to the histone H2B family. (126 aa)
	SUMO1	Small ubiquitin-related modifier. (101 aa)
	H2BC15	Histone H2B; Belongs to the histone H2B family. (126 aa)
	RAD52	RAD52 homolog, DNA repair protein. (416 aa)
	H2BE1	Histone H2B; Belongs to the histone H2B family. (122 aa)
	LOC102181912	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC102175243	Histone domain-containing protein; Belongs to the histone H2B family. (122 aa)
	H2BC18	Histone H2B; Belongs to the histone H2B family. (126 aa)
	LOC102172226	Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
	LOC102179187	Histone H2B; Belongs to the histone H2B family. (126 aa)
	H2BC1	Histone H2B; Belongs to the histone H2B family. (127 aa)
	SUMO2	Small ubiquitin-related modifier. (95 aa)
	FBH1	F-box DNA helicase 1. (1048 aa)
	SUMO3	Small ubiquitin-related modifier. (104 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
	ACTB	Uncharacterized protein. (375 aa)
	H2BC21	Histone H2B; Belongs to the histone H2B family. (126 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	H2BC1	ENSCHIP00000011080	ENSCHIP00000004443	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BC11	ENSCHIP00000011080	ENSCHIP00000007844	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.455
ACTB	H2BC12	ENSCHIP00000011080	ENSCHIP00000001016	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.447
ACTB	H2BC15	ENSCHIP00000011080	ENSCHIP00000005090	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BC18	ENSCHIP00000011080	ENSCHIP00000003561	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BC21	ENSCHIP00000011080	ENSCHIP00000010450	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BC3	ENSCHIP00000011080	ENSCHIP00000007517	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.456
ACTB	H2BC5	ENSCHIP00000011080	ENSCHIP00000005407	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BE1	ENSCHIP00000011080	ENSCHIP00000010323	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	H2BU1	ENSCHIP00000011080	ENSCHIP00000005177	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	LOC102172226	ENSCHIP00000011080	ENSCHIP00000003635	Uncharacterized protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.446
ACTB	LOC102175243	ENSCHIP00000011080	ENSCHIP00000002900	Uncharacterized protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.446
ACTB	LOC102179187	ENSCHIP00000011080	ENSCHIP00000004434	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.446
ACTB	LOC102181912	ENSCHIP00000011080	ENSCHIP00000002856	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.450
ACTB	RAD52	ENSCHIP00000011080	ENSCHIP00000004740	Uncharacterized protein.	RAD52 homolog, DNA repair protein.	0.410
ACTB	SUMO1	ENSCHIP00000011080	ENSCHIP00000004495	Uncharacterized protein.	Small ubiquitin-related modifier.	0.694
ACTB	SUMO2	ENSCHIP00000011080	ENSCHIP00000032566	Uncharacterized protein.	Small ubiquitin-related modifier.	0.656
ACTB	SUMO3	ENSCHIP00000011080	ENSCHIP00000015197	Uncharacterized protein.	Small ubiquitin-related modifier.	0.609
ACTB	SUMO4	ENSCHIP00000011080	ENSCHIP00000006981	Uncharacterized protein.	Small ubiquitin-related modifier.	0.609
FBH1	PCNA	ENSCHIP00000015825	ENSCHIP00000015091	F-box DNA helicase 1.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.901