(9 nodes) (2023) A versatile genomic transgenesis platform with enhanced lambda integrase for human Expi293F cells. network (Capra hircus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOX	Lysyl oxidase. (418 aa)
	PXDN	Peroxidasin. (1525 aa)
	EEF1A2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (463 aa)
	ENSCHIP00000016659	Tr-type G domain-containing protein. (120 aa)
	ENSCHIP00000003677	Tr-type G domain-containing protein. (438 aa)
	LOC108636537	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (441 aa)
	EEF1A1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
	ACTB	Uncharacterized protein. (375 aa)
	SH3RF3	SH3 domain containing ring finger 3. (848 aa)

Your Current Organism:

Capra hircus

NCBI taxonomy Id: 9925
Other names: African dwarf goat, African dwarf goats, C. hircus, Capra aegagrus hircus, domestic goat, goat, goats

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTB	EEF1A1	ENSCHIP00000011080	ENSCHIP00000006227	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.749
ACTB	EEF1A2	ENSCHIP00000011080	ENSCHIP00000016275	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.647
ACTB	ENSCHIP00000003677	ENSCHIP00000011080	ENSCHIP00000003677	Uncharacterized protein.	Tr-type G domain-containing protein.	0.664
ACTB	ENSCHIP00000016659	ENSCHIP00000011080	ENSCHIP00000016659	Uncharacterized protein.	Tr-type G domain-containing protein.	0.665
ACTB	LOC108636537	ENSCHIP00000011080	ENSCHIP00000003897	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.665
ACTB	LOX	ENSCHIP00000011080	ENSCHIP00000017017	Uncharacterized protein.	Lysyl oxidase.	0.693
ACTB	PXDN	ENSCHIP00000011080	ENSCHIP00000015493	Uncharacterized protein.	Peroxidasin.	0.962
EEF1A1	ACTB	ENSCHIP00000006227	ENSCHIP00000011080	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.749
EEF1A2	ACTB	ENSCHIP00000016275	ENSCHIP00000011080	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.647
ENSCHIP00000003677	ACTB	ENSCHIP00000003677	ENSCHIP00000011080	Tr-type G domain-containing protein.	Uncharacterized protein.	0.664
ENSCHIP00000016659	ACTB	ENSCHIP00000016659	ENSCHIP00000011080	Tr-type G domain-containing protein.	Uncharacterized protein.	0.665
LOC108636537	ACTB	ENSCHIP00000003897	ENSCHIP00000011080	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.665
LOX	ACTB	ENSCHIP00000017017	ENSCHIP00000011080	Lysyl oxidase.	Uncharacterized protein.	0.693
LOX	PXDN	ENSCHIP00000017017	ENSCHIP00000015493	Lysyl oxidase.	Peroxidasin.	0.566
PXDN	ACTB	ENSCHIP00000015493	ENSCHIP00000011080	Peroxidasin.	Uncharacterized protein.	0.962
PXDN	LOX	ENSCHIP00000015493	ENSCHIP00000017017	Peroxidasin.	Lysyl oxidase.	0.566