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hofC hofC hofB hofB ppdD ppdD cypD cypD ybaV ybaV ybaW ybaW ycaI ycaI ppdC ppdC ygdB ygdB ppdB ppdB ppdA ppdA smf smf hopD hopD hofQ hofQ yrfA yrfA yrfB yrfB yrfC yrfC yrfD yrfD yhgH yhgH radC radC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hofCSimilar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); Blastp hit to AAC73217.1 (400 aa), 67% identity in aa 1 - 400. (400 aa)
hofBPutative integral membrane protein; Involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptake; similar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); Blastp hit to AAC73218.1 (461 aa), 69% identity in aa 1 - 459. (461 aa)
ppdDPrelipin peptidase dependent protein; Putative major component of type IV pilin; similar to E. coli prelipin peptidase dependent protein (AAC73219.1); Blastp hit to AAC73219.1 (146 aa), 89% identity in aa 1 - 146. (145 aa)
cypDPeptidyl prolyl isomerase; Similar to E. coli putative protease maturation protein (AAC73544.1); Blastp hit to AAC73544.1 (623 aa), 88% identity in aa 1 - 623. (623 aa)
ybaVPutative DNA uptake protein and related DNA-binding proteins; Similar to E. coli orf, hypothetical protein (AAC73545.1); Blastp hit to AAC73545.1 (123 aa), 83% identity in aa 1 - 123. (124 aa)
ybaWPutative esterase; Similar to E. coli orf, hypothetical protein (AAC73546.1); Blastp hit to AAC73546.1 (132 aa), 94% identity in aa 1 - 132. (132 aa)
ycaIPutative recombination protein; Similar to E. coli orf, hypothetical protein (AAC73999.1); Blastp hit to AAC73999.1 (780 aa), 70% identity in aa 27 - 780. (754 aa)
ppdCPrepilin peptidase dependent protein C; Putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein C (AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity in aa 1 - 106. (106 aa)
ygdBPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity in aa 1 - 121. (135 aa)
ppdBPrepilin peptidase dependent protein B; Putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein B (AAC75864.1); Blastp hit to AAC75864.1 (187 aa), 67% identity in aa 3 - 187. (187 aa)
ppdAPrepilin peptidase dependent protein A; Putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein A (AAC75865.1); Blastp hit to AAC75865.1 (156 aa), 65% identity in aa 1 - 155. (156 aa)
smfPutative protein involved in DNA uptake; Similar to E. coli orf, fragment 1 (AAC76311.1); Blastp hit to AAC76311.1 (253 aa), 66% identity in aa 1 - 248. (374 aa)
hopDSimilar to E. coli leader peptidase, integral membrane protein (AAC76360.1); Blastp hit to AAC76360.1 (225 aa), 47% identity in aa 80 - 215; Belongs to the peptidase A24 family. (155 aa)
hofQPutative transport protein; Possibly in biosynthesis of type IV pilin; similar to E. coli putative transport portein (AAC76416.1); Blastp hit to AAC76416.1 (412 aa), 86% identity in aa 1 - 412. (412 aa)
yrfAPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76417.1); Blastp hit to AAC76417.1 (147 aa), 61% identity in aa 14 - 146. (133 aa)
yrfBPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76418.1); Blastp hit to AAC76418.1 (146 aa), 46% identity in aa 1 - 146. (157 aa)
yrfCPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76419.1); Blastp hit to AAC76419.1 (179 aa), 49% identity in aa 5 - 179. (179 aa)
yrfDPutative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76420.1); Blastp hit to AAC76420.1 (268 aa), 65% identity in aa 10 - 266. (259 aa)
yhgHPutative amidophosphoribosyltransferase; Could be involved in gluconate metabolism. (227 aa)
radCPutative DNA repair protein; Associated with replication forks; similar to E. coli DNA repair protein (AAC76662.1); Blastp hit to AAC76662.1 (224 aa), 83% identity in aa 10 - 224; Belongs to the UPF0758 family. YicR subfamily. (221 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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