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yddX yddX ycjF ycjF ycjX ycjX pspE pspE pspD pspD pspC pspC pspB pspB pspA pspA ygiB ygiB ygiC ygiC yjfI yjfI yjfJ yjfJ STM4372 STM4372 yjfK yjfK yjfL yjfL yjfM yjfM yjfC yjfC aidB aidB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yddXPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74554.1); Blastp hit to AAC74554.1 (92 aa), 88% identity in aa 22 - 92. (71 aa)
ycjFPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74404.1); Blastp hit to AAC74404.1 (353 aa), 88% identity in aa 1 - 353. (353 aa)
ycjXSimilar to E. coli putative EC 2.1 enzymes (AAC74403.1); Blastp hit to AAC74403.1 (465 aa), 93% identity in aa 1 - 465. (467 aa)
pspESimilar to E. coli phage shock protein (AAC74390.1); Blastp hit to AAC74390.1 (104 aa), 66% identity in aa 1 - 103. (104 aa)
pspDSimilar to E. coli phage shock protein (AAC74389.1); Blastp hit to AAC74389.1 (73 aa), 87% identity in aa 1 - 72. (72 aa)
pspCPhage shock protein; Regulatory gene; activates expression of psp operon with PspB; similar to E. coli phage shock protein: activates phage shock-protein expression (AAC74388.1); Blastp hit to AAC74388.1 (119 aa), 84% identity in aa 1 - 119. (119 aa)
pspBPhage shock protein; Regulatory gene; activates expression of psp operon with PspC; similar to E. coli phage shock protein (AAC74387.1); Blastp hit to AAC74387.1 (74 aa), 89% identity in aa 1 - 74. (74 aa)
pspAPhage shock protein; Negative regulatory gene for the psp opreon; similar to E. coli phage shock protein, inner membrane protein (AAC74386.1); Blastp hit to AAC74386.1 (222 aa), 91% identity in aa 1 - 222. (222 aa)
ygiBPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76073.1); Blastp hit to AAC76073.1 (234 aa), 96% identity in aa 12 - 234; Belongs to the UPF0441 family. (223 aa)
ygiCPutative glutathionylspermidine synthase; Similar to E. coli putative synthetase/amidase (AAC76074.1); Blastp hit to AAC76074.1 (386 aa), 94% identity in aa 1 - 386. (387 aa)
yjfIPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77138.1); Blastp hit to AAC77138.1 (133 aa), 64% identity in aa 1 - 132. (134 aa)
yjfJPutative phage shock protein A; IM30; suppresses sigma54-dependent transcription; similar to E. coli putative alpha helical protein (AAC77139.1); Blastp hit to AAC77139.1 (232 aa), 88% identity in aa 1 - 232. (232 aa)
STM4372Resembles eukaryotic-type potassium channels. (356 aa)
yjfKPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77140.1); Blastp hit to AAC77140.1 (219 aa), 80% identity in aa 1 - 219. (227 aa)
yjfLPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77141.1); Blastp hit to AAC77141.1 (132 aa), 90% identity in aa 1 - 132. (132 aa)
yjfMPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77142.1); Blastp hit to AAC77142.1 (212 aa), 69% identity in aa 1 - 212. (212 aa)
yjfCPutative glutathionylspermidine synthase; Similar to E. coli putative synthetase/amidase (AAC77143.1); Blastp hit to AAC77143.1 (387 aa), 89% identity in aa 1 - 387. (387 aa)
aidBPutative acyl-CoA dehydrogenase; Adaptive response; transcription activated by Ada; similar to E. coli putative acyl coenzyme A dehydrogenase (AAC77144.1); Blastp hit to AAC77144.1 (546 aa), 85% identity in aa 8 - 544. (540 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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