STRINGSTRING
ssaC ssaC ssaD ssaD ssaJ ssaJ ssaR ssaR ssaS ssaS ssaT ssaT ssaU ssaU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ssaCSecretion system apparatus protein; SpiA (gi|1498307). (497 aa)
ssaDSecretion system apparatus protein; SpiB (gi|1498308). (403 aa)
ssaJSecretion system apparatus protein; Component of Salmonella pathogenicity island 2 (SPI-2) type III secretion system, required for secretion of some type III-secreted effectors including the SpvB toxin. (249 aa)
ssaRHomology with YscR of the secretion system of Yersinia; virulence protein yscr (SW:YSCR_SALTY). (215 aa)
ssaSSecretion system apparatus; Part of a type III secretion system; Belongs to the FliQ/MopD/SpaQ family. (88 aa)
ssaTSecretion system apparatus protein; Part of a type III secretion system; Belongs to the FliR/MopE/SpaR family. (259 aa)
ssaUSecretion system apparatus protein; Part of a type III secretion system; Belongs to the type III secretion exporter family. (352 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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