(6 nodes) Mixed, incl. Acetate transport, and Thioredoxin peroxidase activity network (Salmonella enterica Typhimurium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bcp	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156. (156 aa)
	ygdI	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75. (75 aa)
	STM3021	Putative inner membrane protein. (160 aa)
	yicS	Putative inner membrane protein. (97 aa)
	yjcG	Putative SSS family transport protein; Transports acetate; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (549 aa)
	yjcH	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102. (104 aa)

Your Current Organism:

Salmonella enterica Typhimurium

NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
STM3021	bcp	STM3021	STM2491	Putative inner membrane protein.	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	0.716
STM3021	ygdI	STM3021	STM2983	Putative inner membrane protein.	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	0.891
STM3021	yicS	STM3021	STM3774	Putative inner membrane protein.	Putative inner membrane protein.	0.768
STM3021	yjcH	STM3021	STM4274	Putative inner membrane protein.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	0.729
bcp	STM3021	STM2491	STM3021	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	Putative inner membrane protein.	0.716
bcp	ygdI	STM2491	STM2983	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	0.670
bcp	yicS	STM2491	STM3774	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	Putative inner membrane protein.	0.457
ygdI	STM3021	STM2983	STM3021	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	Putative inner membrane protein.	0.891
ygdI	bcp	STM2983	STM2491	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	0.670
ygdI	yicS	STM2983	STM3774	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	Putative inner membrane protein.	0.763
ygdI	yjcH	STM2983	STM4274	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	0.659
yicS	STM3021	STM3774	STM3021	Putative inner membrane protein.	Putative inner membrane protein.	0.768
yicS	bcp	STM3774	STM2491	Putative inner membrane protein.	Thioredoxin dependent thiol peroxidase; Similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156.	0.457
yicS	ygdI	STM3774	STM2983	Putative inner membrane protein.	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	0.763
yicS	yjcH	STM3774	STM4274	Putative inner membrane protein.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	0.671
yjcG	yjcH	STM4273	STM4274	Putative SSS family transport protein; Transports acetate; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	0.999
yjcH	STM3021	STM4274	STM3021	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	Putative inner membrane protein.	0.729
yjcH	ygdI	STM4274	STM2983	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75.	0.659
yjcH	yicS	STM4274	STM3774	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	Putative inner membrane protein.	0.671
yjcH	yjcG	STM4274	STM4273	Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102.	Putative SSS family transport protein; Transports acetate; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.999

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