STRINGSTRING
yceB yceB STM4488 STM4488 STM4489 STM4489 STM4490 STM4490 STM4491 STM4491 STM4492 STM4492 STM4493 STM4493 STM4494 STM4494 STM4495 STM4495 STM4496 STM4496 STM4497 STM4497 STM4498 STM4498 hsdS hsdS hsdM hsdM hsdR hsdR mrr mrr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yceBPutative outer membrane lipoprotein; Hypothetical protein in pyrC 3'region. (SW:YCEB_SALTY). (186 aa)
STM4488Similar to E. coli putative prophage integrase (AAC75495.1); Blastp hit to AAC75495.1 (431 aa), 39% identity in aa 35 - 123. (95 aa)
STM4489Putative superfamily I DNA helicases; Similar to E. coli putative frameshift suppressor (AAC77264.1); Blastp hit to AAC77264.1 (338 aa), 68% identity in aa 1 - 338. (1171 aa)
STM4490Putative Mrr restriction endonuclease. (329 aa)
STM4491Similar to E. coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); Blastp hit to AAC73542.1 (784 aa), 27% identity in aa 610 - 757, 26% identity in aa 193 - 259, 50% identity in aa 352 - 363. (694 aa)
STM4492Putative cytoplasmic protein. (865 aa)
STM4493Putative cytoplasmic protein. (273 aa)
STM4494Putative ABC-type sugar/spermidine/putrescine transport systems, ATPase component. (363 aa)
STM4495Putative type II restriction enzyme, methylase subunit. (1225 aa)
STM4496Putative ATPase involved in DNA repair. (1213 aa)
STM4497Putative cytoplasmic protein. (200 aa)
STM4498Putative inner membrane protein. (200 aa)
hsdSSpecificity determinant for hsdM and hsdR; The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance M [...] (469 aa)
hsdMDNA methylase M, host modification; Methylation of specific adenine residues; required for both restriction and modification activities (By similarity). The StySJI enzyme recognizes 5'-GAGN(6)GTRC-3'; Belongs to the N(4)/N(6)-methyltransferase family. (529 aa)
hsdRHost restriction; similar to E. coli host restriction; endonuclease R (AAC77306.1); Blastp hit to AAC77306.1 (1188 aa), 91% identity in aa 20 - 1188. (1169 aa)
mrrSimilar to E. coli restriction of methylated adenine (AAC77307.1); Blastp hit to AAC77307.1 (304 aa), 77% identity in aa 1 - 304. (304 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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