STRINGSTRING
cdaR cdaR abrB abrB ybjT ybjT STM1006 STM1006 STM1007 STM1007 STM1008 STM1008 STM1009 STM1009 STM1011 STM1011 STM1012 STM1012 STM1013 STM1013 STM1014 STM1014 STM1015 STM1015 STM1016 STM1016 STM1017 STM1017 STM1018 STM1018 STM1019 STM1019 STM1029 STM1029 ydiN ydiN STM1550 STM1550 STM1551 STM1551 ychK ychK STM1760 STM1760 STM2233 STM2233 STM2234 STM2234 STM2235 STM2235 STM2236 STM2236 STM2237 STM2237 STM2238 STM2238 STM2239 STM2239 STM2240 STM2240 STM2245 STM2245 STM2904 STM2904 STM2905 STM2905 STM2906 STM2906 vapC vapC vapB vapB STM3035 STM3035 yqiC yqiC bigA bigA STM3516 STM3516 STM3517 STM3517 rtcA rtcA rtcB rtcB STM3521 STM3521 rtcR rtcR yhhV yhhV STM3651 STM3651 STM3652 STM3652 STMD1.84 STMD1.84 STMD1.83 STMD1.83 STM4030 STM4030 STM4031 STM4031 STM4032 STM4032 STM4097 STM4097 STM4316 STM4316 STM4317 STM4317 STM4318 STM4318 STM4522 STM4522 yjiW yjiW STM4528 STM4528 STM4529 STM4529
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cdaRPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73273.1); Blastp hit to AAC73273.1 (391 aa), 95% identity in aa 7 - 391. (385 aa)
abrBSimilar to E. coli putative transport protein (AAC73809.1); Blastp hit to AAC73809.1 (363 aa), 80% identity in aa 16 - 361. (348 aa)
ybjTPutative nucleoside-diphosphate-sugar epimerase; Similar to E. coli putative dTDP-glucose enzyme (AAC73956.1); Blastp hit to AAC73956.1 (486 aa), 84% identity in aa 11 - 486. (477 aa)
STM1006Gifsy-2 prophage excisionase. (82 aa)
STM1007Gifsy-2 prophage protein. (79 aa)
STM1008Gifsy-2 prophage protein; Hypothetical protein AAC26069.1 (gi|7467267). (385 aa)
STM1009Gifsy-2 prophage exodeoxyribonuclease; Exodeoxyribonuclease VIII homolog (gi|7467238). (961 aa)
STM1011Gifsy-2 prophage protein; Hypothetical protein 2 (gi|7467263). (86 aa)
STM1012Gifsy-2 prophage putative regulatory protein; Probable regulatory protein (gi|7467281). (136 aa)
STM1013Gifsy-2 prophage putative regulatory protein; Probable regulatory protein (gi|7467282). (124 aa)
STM1014Gifsy-2 prophage putative regulatory protein; Probable replication protein (gi|7467283). (327 aa)
STM1015Gifsy-2 prophage ATPase involved in DNA replication initiation; dnaC protein homolog (gi|7443681). (249 aa)
STM1016Gifsy-2 prophage protein; Hypothetical protein (gi|7467246). (115 aa)
STM1017Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467260). (103 aa)
STM1018Gifsy-2 prophage protein; Hypothetical protein 11 (gi|7467261). (96 aa)
STM1019Gifsy-2 prophage protein; Hypothetical protein 13 (gi|7467262). (77 aa)
STM1029Gifsy-2 prophage protein; Bacteriophage ES18 gp15 protein (gi|1143595). (159 aa)
ydiNSimilar to E. coli putative amino acid/amine transport protein (AAC74761.1); Blastp hit to AAC74761.1 (423 aa), 85% identity in aa 3 - 412. (411 aa)
STM1550Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74636.1); Blastp hit to AAC74636.1 (95 aa), 62% identity in aa 1 - 87. (94 aa)
STM1551Putative cytoplasmic protein. (82 aa)
ychKPutative phosphoesterase; Similar to E. coli orf, hypothetical protein (AAC74316.1); Blastp hit to AAC74316.1 (314 aa), 83% identity in aa 14 - 314. (301 aa)
STM1760Putative TPR repeat protein; Similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 31% identity in aa 16 - 305, 33% identity in aa 29 - 273, 32% identity in aa 19 - 307, 33% identity in aa 47 - 320, 30-1073758628dentity in aa 22 - 312, 29% identity in aa 15 - 312, 34-1073758654dentity in aa 12 - 166. (509 aa)
STM2233Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75413.1); Blastp hit to AAC75413.1 (146 aa), 46% identity in aa 5 - 146. (147 aa)
STM2234Putative tail fiber assembly protein. (175 aa)
STM2235Putative phage protein; Similar to E. coli orf, hypothetical protein (AAC74238.1); Blastp hit to AAC74238.1 (209 aa), 62% identity in aa 1 - 74. (413 aa)
STM2236Putative phage protein. (172 aa)
STM2237Putative inner membrane protein. (109 aa)
STM2238Putative phage protein. (443 aa)
STM2239Similar to antiterminator protein Q of phage P5; similar to E. coli orf, hypothetical protein (AAC73652.1); Blastp hit to AAC73652.1 (127 aa), 47% identity in aa 1 - 121. (122 aa)
STM2240Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74633.1); Blastp hit to AAC74633.1 (362 aa), 84% identity in aa 251 - 362, 43% identity in aa 14 - 238. (329 aa)
STM2245Putative outer membrane protein. (187 aa)
STM2904Putative ABC-type transport system. (96 aa)
STM2905Putative acetyltransferase. (175 aa)
STM2906Putative cytoplasmic protein. (62 aa)
vapCPutative nucleic acid-binding protein; Toxic component of a type II toxin-antitoxin (TA) system. A site-specific tRNA-(fMet) endonuclease, it cleaves both charged and uncharged tRNA-(fMet) between positions 38 and 39 at the anticodon stem-loop boundary. Does not cleave tRNA(Met), tRNA(Arg2), tRNA(His), tRNA(Leu), tRNA(Phe) tRNA(Thr1), tRNA(Tyr) or tRNA(Val). Overexpression in E.coli inhibits translation, leads to loss of cell growth and degradation of tRNA(fMet), these effects are neutralized by expression of cognate antitoxin VapB. Expression also activates translation initiation at c [...] (132 aa)
vapBPutative cytoplasmic protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Upon expression in E.coli neutralizes the effect of cognate toxin VapC. (75 aa)
STM3035Putative periplasmic protein. (83 aa)
yqiCPutative cytoplasmic protein; Required for efficient ubiquinone (coenzyme Q) biosynthesis under aerobic conditions. UbiK is probably an accessory factor of Ubi enzymes and facilitates ubiquinone biosynthesis by acting as an assembly factor, a targeting factor, or both. Dispensable for ubiquinone biosynthesis under anaerobiosis. Required for proliferation in macrophages and virulence in mice. Significantly contributes to colonization and invasion as well as host inflammation and innate immunity after infection. In vitro, has membrane fusogenic activity at acidic pH. (119 aa)
bigAPutative surface-exposed virulence protein BigA (gi|5081595). (1953 aa)
STM3516Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73329.1); Blastp hit to AAC73329.1 (92 aa), 78% identity in aa 1 - 91. (91 aa)
STM3517Putative DNA-damage-inducibile protein; Resembles dinJ; similar to E. coli damage-inducible protein J (AAC73330.1); Blastp hit to AAC73330.1 (86 aa), 83% identity in aa 1 - 86. (86 aa)
rtcARNA 3'-terminal phosphate cyclase (with b3419); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. (339 aa)
rtcBPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76446.1); Blastp hit to AAC76446.1 (408 aa), 87% identity in aa 1 - 408. (405 aa)
STM3521Putative ribonucleoprotein related-protein. (517 aa)
rtcRSigma N (sigma 54)-dependent regulator of rtcBA expression; EBP family; similar to E. coli putative 2-component regulator (AAC76447.1); Blastp hit to AAC76447.1 (532 aa), 84% identity in aa 1 - 527. (527 aa)
yhhVPutative cytoplasmic protein; Putative antitoxin component of a toxin-antitoxin (TA) system; its cognate toxin is unknown. (75 aa)
STM3651Putative acetyltransferase. (161 aa)
STM3652Putative cytoplasmic protein. (95 aa)
STMD1.84Putative cytoplasmic protein. (105 aa)
STMD1.83Putative cytoplasmic protein. (113 aa)
STM4030Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76117.1); Blastp hit to AAC76117.1 (138 aa), 45% identity in aa 19 - 138. (148 aa)
STM4031Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76118.1); Blastp hit to AAC76118.1 (104 aa), 40% identity in aa 1 - 99. (103 aa)
STM4032Putative acetyl esterase; Similar to E. coli putative lipase (AAC73578.1); Blastp hit to AAC73578.1 (319 aa), 32% identity in aa 84 - 312. (309 aa)
STM4097Putative outer membrane lipoprotein. (220 aa)
STM4316Putative cytoplasmic protein. (73 aa)
STM4317Putative copG family helix-turn-helix protein. (97 aa)
STM4318Putative acetyltransferase. (163 aa)
STM4522Putative inner membrane protein. (233 aa)
yjiWPutative SOS response protein; Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease Lon. Belongs to the SymE family. (110 aa)
STM4528Putative inner membrane protein. (95 aa)
STM4529Putative cytoplasmic protein. (100 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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