STRINGSTRING
STM0947 STM0947 STM0948 STM0948 STM0950 STM0950 STM0951 STM0951 STM0952 STM0952 ycbG ycbG STM1554 STM1554 STM1860 STM1860 STM1861 STM1861 STM2133 STM2133 STM2134 STM2134 STM2135 STM2135 yegQ yegQ STM2509 STM2509
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
STM0947Putative integrase protein; Similar to E. coli IS150 putative transposase (AAC76582.1); Blastp hit to AAC76582.1 (283 aa), 29% identity in aa 109 - 279. (227 aa)
STM0948Putative cytoplasmic protein. (133 aa)
STM0950Homolog of slsA in STM; SlsA (gi|4324613). (225 aa)
STM0951Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76464.1); Blastp hit to AAC76464.1 (231 aa), 27% identity in aa 52 - 222, 23% identity in aa 101 - 231; Belongs to the pirin family. (286 aa)
STM0952Similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 31% identity in aa 1 - 291; Belongs to the LysR transcriptional regulatory family. (303 aa)
ycbGPutative cytoplasmic protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain. (150 aa)
STM1554Putative coiled-coil protein. (488 aa)
STM1860Putative transposase; Required for the transposition of the insertion element. (285 aa)
STM1861Putative cytoplasmic protein; Similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 43% identity in aa 253 - 366. (122 aa)
STM2133Putative cytoplasmic protein. (294 aa)
STM2134Putative inner membrane protein. (238 aa)
STM2135Putative inner membrane protein. (703 aa)
yegQPutative protease; Similar to E. coli orf, hypothetical protein (AAC75142.1); Blastp hit to AAC75142.1 (453 aa), 96% identity in aa 1 - 453. (453 aa)
STM2509Similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 54% identity in aa 146 - 242. (118 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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