STRINGSTRING
ygbF ygbF cas1 cas1 ygcH ygcH STM2940 STM2940 yghJ yghJ STM2942 STM2942 STM2943 STM2943 ygcB ygcB ygdQ ygdQ ygdR ygdR tas tas STM3860 STM3860
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ygbFPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75796.1); Blastp hit to AAC75796.1 (116 aa), 84% identity in aa 23 - 116. (98 aa)
cas1Putative cytoplasmic protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (306 aa)
ygcHPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75798.1); Blastp hit to AAC75798.1 (199 aa), 28% identity in aa 3 - 198. (216 aa)
STM2940Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75799.1); Blastp hit to AAC75799.1 (226 aa), 35% identity in aa 3 - 159. (248 aa)
yghJPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75800.1); Blastp hit to AAC75800.1 (363 aa), 29% identity in aa 1 - 334. (352 aa)
STM2942Putative transposase. (186 aa)
STM2943Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75802.1); Blastp hit to AAC75802.1 (502 aa), 28% identity in aa 2 - 289. (518 aa)
ygcBPutative helicase; Similar to E. coli orf, hypothetical protein (AAC75803.1); Blastp hit to AAC75803.1 (888 aa), 30% identity in aa 7 - 849. (887 aa)
ygdQSimilar to E. coli putative transport protein (AAC75871.1); Blastp hit to AAC75871.1 (237 aa), 94% identity in aa 1 - 237. (237 aa)
ygdRPutative POT family peptide transport protein; Similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 90% identity in aa 1 - 72. (72 aa)
tasPutative aldo/keto reductase; Similar to E. coli orf, hypothetical protein (AAC75873.1); Blastp hit to AAC75873.1 (346 aa), 91% identity in aa 1 - 346. (346 aa)
STM3860Putative dipeptide/oligopeptide/nickel ABC-type transport systems; Periplasmic component; similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 49% identity in aa 1 - 309, 29% identity in aa 297 - 548. (585 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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