STRINGSTRING
rfbI-2 rfbI-2 rfe rfe rfbB rfbB rfbD rfbD rfbA rfbA rfbC rfbC rfbF rfbF rfbG rfbG rfbH rfbH rfbJ rfbJ rfbX rfbX rfbV rfbV rfbU rfbU rfbN rfbN rfbM rfbM rfbK rfbK rfbP rfbP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfbI-2CDP-6-deoxy-delta3,4-glucoseen reductase; LPS side chain defect; RFBI protein. (SW:RFBI_SALTY). (330 aa)
rfeUndecaprenyl-phosphate N-acetylglucosaminyltransferase; Catalyzes the transfer of the GlcNAc-1-phosphate moiety from UDP-GlcNAc onto the carrier lipid undecaprenyl phosphate (C55-P), yielding GlcNAc-pyrophosphoryl-undecaprenyl (GlcNAc-PP-C55). Belongs to the glycosyltransferase 4 family. WecA subfamily. (367 aa)
rfbBdTDP-glucose 4,6 dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6- deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (361 aa)
rfbDTDP-rhamnose synthetase; Involved in the biosynthesis of the dTDP-L-rhamnose which is an important component of lipopolysaccharide (LPS). Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well. (299 aa)
rfbAdTDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Is also able to convert non natural substrates such as a wide array of alpha-D- hexopyranosyl, deoxy-alpha-D-glucopyranosyl, aminodeoxy-alpha-D- hexopyranosyl and acetamidodeoxy-alpha-D-hexopyranosyl phosphates to their corresponding dTDP- and UDP-nucleotide sugars. (292 aa)
rfbCdTDP-4,deoxyrhamnose 3,5 epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
rfbFGlucose-1-phosphate cytidylyltransferase; Involved in the biosynthesis of the tyvelose, a 3,6- dideoxyhexose found in the O-antigen of the surface lipopolysaccharides. It catalyzes the transfer of a CMP moiety from CTP to glucose 1-phosphate (By similarity). (257 aa)
rfbGLPS side chain defect; CDP-glucose 4,6-dehydratase. (SW:RFBG_SALTY); Belongs to the NAD(P)-dependent epimerase/dehydratase family. (359 aa)
rfbHCDP-6deoxy-D-xylo-4-hexulose-3-dehydrase; LPS side chain defect; lipopolysaccharide biosynthesis protein RFBH. (SW:RFBH_SALTY); Belongs to the DegT/DnrJ/EryC1 family. (437 aa)
rfbJLPS side chain defect; CDP-abequose synthase. (SW:RFBJ_SALTY). (299 aa)
rfbXPutative O-antigen transferase; May be involved in the translocation process of the nascent O-polysaccharide molecules and/or its ligation to lipid A core units. (430 aa)
rfbVAbequosyltransferase; Catalyzes the transfer of CDP-abequose on D-mannosyl-L- rhamnosyl-D-galactose-1-diphospholipid to yield D-abequosyl-D-mannosyl- rhamnosyl-D-galactose-1-diphospholipid. (333 aa)
rfbUMannosyl transferase; LPS side chain defect; RFBU protein. (SW:RFBU_SALTY). (353 aa)
rfbNLPS side chain defect: putative rhamnosyltransferase RFBN. (SW:RFBN_SALTY). (314 aa)
rfbMMannose-1-phosphate guanylyltransferase; Involved in GDP-mannose biosynthesis which serves as the activated sugar nucleotide precursor for mannose residues in cell surface polysaccharides. This enzyme participates in synthesis of the LPS group B O antigen; Belongs to the mannose-6-phosphate isomerase type 2 family. (479 aa)
rfbKPhosphomannomutase; Involved in GDP-mannose biosynthesis which serves as the activated sugar nucleotide precursor for mannose residues in cell surface polysaccharides. This enzyme participates in synthesis of the LPS group B O antigen; Belongs to the phosphohexose mutase family. (477 aa)
rfbPUndecaprenol-phosphate galactosephosphotransferase, and; Is responsible for transferring galactose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O- polysaccharide biosynthesis; Belongs to the bacterial sugar transferase family. (476 aa)
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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