Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pagO | pipD | STM1862 | STM1094 | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | Pathogenicity island encoded protein: SPI5. | 0.703 |
| pagO | ratB | STM1862 | STM2514 | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | Putative outer membrane protein; RatB (gi|5107806). | 0.717 |
| pagO | sseI | STM1862 | STM1051 | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | 0.458 |
| pipD | pagO | STM1094 | STM1862 | Pathogenicity island encoded protein: SPI5. | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | 0.703 |
| pipD | prgH | STM1094 | STM2874 | Pathogenicity island encoded protein: SPI5. | Cell invasion protein; Required for invasion of epithelial cells. | 0.495 |
| pipD | ratB | STM1094 | STM2514 | Pathogenicity island encoded protein: SPI5. | Putative outer membrane protein; RatB (gi|5107806). | 0.810 |
| pipD | sseI | STM1094 | STM1051 | Pathogenicity island encoded protein: SPI5. | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | 0.699 |
| prgH | pipD | STM2874 | STM1094 | Cell invasion protein; Required for invasion of epithelial cells. | Pathogenicity island encoded protein: SPI5. | 0.495 |
| ratB | pagO | STM2514 | STM1862 | Putative outer membrane protein; RatB (gi|5107806). | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | 0.717 |
| ratB | pipD | STM2514 | STM1094 | Putative outer membrane protein; RatB (gi|5107806). | Pathogenicity island encoded protein: SPI5. | 0.810 |
| ratB | sseI | STM2514 | STM1051 | Putative outer membrane protein; RatB (gi|5107806). | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | 0.838 |
| sseI | pagO | STM1051 | STM1862 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY). | 0.458 |
| sseI | pipD | STM1051 | STM1094 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Pathogenicity island encoded protein: SPI5. | 0.699 |
| sseI | ratB | STM1051 | STM2514 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Putative outer membrane protein; RatB (gi|5107806). | 0.838 |