Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| gyrA | ybjZ | STM2272 | STM0942 | DNA gyrase, subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state, and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings. Replenishes negative supercoiling downstream of highly transcribed genes to help control overall chromosomal supercoiling density. E.coli makes 15% more negative supercoils in pBR322 plasmid DNA than S.typhimurium; the S.typhimurium GyrB s [...] | Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.689 |
| katE | yhjU | STM1318 | STM3624 | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | Putative inner membrane protein; Required for cellulose biosynthesis. | 0.450 |
| lpxO | ratB | STM4286 | STM2514 | Putative dioxygenase for synthesis of lipid; Putative dioxygenase; LpxO (gi|9454389). | Putative outer membrane protein; RatB (gi|5107806). | 0.580 |
| pipD | ratB | STM1094 | STM2514 | Pathogenicity island encoded protein: SPI5. | Putative outer membrane protein; RatB (gi|5107806). | 0.810 |
| pipD | sseI | STM1094 | STM1051 | Pathogenicity island encoded protein: SPI5. | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | 0.699 |
| pipD | ybjZ | STM1094 | STM0942 | Pathogenicity island encoded protein: SPI5. | Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.465 |
| pipD | yhjU | STM1094 | STM3624 | Pathogenicity island encoded protein: SPI5. | Putative inner membrane protein; Required for cellulose biosynthesis. | 0.763 |
| ratB | lpxO | STM2514 | STM4286 | Putative outer membrane protein; RatB (gi|5107806). | Putative dioxygenase for synthesis of lipid; Putative dioxygenase; LpxO (gi|9454389). | 0.580 |
| ratB | pipD | STM2514 | STM1094 | Putative outer membrane protein; RatB (gi|5107806). | Pathogenicity island encoded protein: SPI5. | 0.810 |
| ratB | sseI | STM2514 | STM1051 | Putative outer membrane protein; RatB (gi|5107806). | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | 0.838 |
| ratB | yhjU | STM2514 | STM3624 | Putative outer membrane protein; RatB (gi|5107806). | Putative inner membrane protein; Required for cellulose biosynthesis. | 0.765 |
| sseI | pipD | STM1051 | STM1094 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Pathogenicity island encoded protein: SPI5. | 0.699 |
| sseI | ratB | STM1051 | STM2514 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Putative outer membrane protein; RatB (gi|5107806). | 0.838 |
| sseI | yhjU | STM1051 | STM3624 | Gifsy-2 prophage putative type III secreted protein; Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protein is required to maintain a long-term chronic systemic infection in mice. It inhibits normal cell migration of primary macrophages and dendritic cells, by a mechanism that involves interaction with the host factor IQGAP1, an important regulator of the cytoskeleton and cell migration. Also accelerates the systemic spread of infection from the gastrointestinal tract to the bloodstream, probably by interacting with host TRIP6. | Putative inner membrane protein; Required for cellulose biosynthesis. | 0.675 |
| ybjZ | gyrA | STM0942 | STM2272 | Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | DNA gyrase, subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state, and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings. Replenishes negative supercoiling downstream of highly transcribed genes to help control overall chromosomal supercoiling density. E.coli makes 15% more negative supercoils in pBR322 plasmid DNA than S.typhimurium; the S.typhimurium GyrB s [...] | 0.689 |
| ybjZ | pipD | STM0942 | STM1094 | Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | Pathogenicity island encoded protein: SPI5. | 0.465 |
| ybjZ | yhjU | STM0942 | STM3624 | Putative ABC superfamily (atp&memb) transport protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | Putative inner membrane protein; Required for cellulose biosynthesis. | 0.506 |
| yhjU | katE | STM3624 | STM1318 | Putative inner membrane protein; Required for cellulose biosynthesis. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.450 |
| yhjU | pipD | STM3624 | STM1094 | Putative inner membrane protein; Required for cellulose biosynthesis. | Pathogenicity island encoded protein: SPI5. | 0.763 |
| yhjU | ratB | STM3624 | STM2514 | Putative inner membrane protein; Required for cellulose biosynthesis. | Putative outer membrane protein; RatB (gi|5107806). | 0.765 |
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