(20 nodes) Mostly uncharacterized, incl. TMEM151 family, and Cell cycle switching network (Ovis aries)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMEM151A	Transmembrane protein 151A. (440 aa)
	OR1P1	Olfactory receptor. (317 aa)
	SYDE1	Synapse defective Rho GTPase homolog 1. (669 aa)
	FBXO21	F-box protein 21. (548 aa)
	STOX2	Storkhead box 2. (873 aa)
	ARHGAP42	Rho GTPase activating protein 42. (872 aa)
	MEIOC	Meiosis specific with coiled-coil domain. (963 aa)
	LOC101115916	Olfactory receptor. (311 aa)
	LOC101116944	Olfactory receptor. (311 aa)
	ABCB5	ATP binding cassette subfamily B member 5. (1257 aa)
	OR2G6	Olfactory receptor. (309 aa)
	LOC114109573	Olfactory receptor. (310 aa)
	MAIP1	Matrix AAA peptidase interacting protein 1. (286 aa)
	UVSSA	UV stimulated scaffold protein A. (649 aa)
	LOC101108746	Olfactory receptor. (309 aa)
	OR2G3	Olfactory receptor. (306 aa)
	LOC114109604	Olfactory receptor. (319 aa)
	ASCL4	Uncharacterized protein. (93 aa)
	NEPRO	Nucleolus and neural progenitor protein. (686 aa)
	PRSS56	Serine protease 56; Belongs to the peptidase S1 family. (606 aa)

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB5	ARHGAP42	ENSOARP00000010912	ENSOARP00000008108	ATP binding cassette subfamily B member 5.	Rho GTPase activating protein 42.	0.851
ABCB5	ASCL4	ENSOARP00000010912	ENSOARP00000019870	ATP binding cassette subfamily B member 5.	Uncharacterized protein.	0.545
ABCB5	FBXO21	ENSOARP00000010912	ENSOARP00000005170	ATP binding cassette subfamily B member 5.	F-box protein 21.	0.740
ABCB5	LOC101108746	ENSOARP00000010912	ENSOARP00000018051	ATP binding cassette subfamily B member 5.	Olfactory receptor.	0.770
ABCB5	MAIP1	ENSOARP00000010912	ENSOARP00000017110	ATP binding cassette subfamily B member 5.	Matrix AAA peptidase interacting protein 1.	0.861
ABCB5	MEIOC	ENSOARP00000010912	ENSOARP00000009319	ATP binding cassette subfamily B member 5.	Meiosis specific with coiled-coil domain.	0.811
ABCB5	NEPRO	ENSOARP00000010912	ENSOARP00000020816	ATP binding cassette subfamily B member 5.	Nucleolus and neural progenitor protein.	0.850
ABCB5	OR1P1	ENSOARP00000010912	ENSOARP00000004405	ATP binding cassette subfamily B member 5.	Olfactory receptor.	0.426
ABCB5	PRSS56	ENSOARP00000010912	ENSOARP00000022361	ATP binding cassette subfamily B member 5.	Serine protease 56; Belongs to the peptidase S1 family.	0.810
ABCB5	STOX2	ENSOARP00000010912	ENSOARP00000007898	ATP binding cassette subfamily B member 5.	Storkhead box 2.	0.851
ABCB5	UVSSA	ENSOARP00000010912	ENSOARP00000017883	ATP binding cassette subfamily B member 5.	UV stimulated scaffold protein A.	0.746
ARHGAP42	ABCB5	ENSOARP00000008108	ENSOARP00000010912	Rho GTPase activating protein 42.	ATP binding cassette subfamily B member 5.	0.851
ARHGAP42	ASCL4	ENSOARP00000008108	ENSOARP00000019870	Rho GTPase activating protein 42.	Uncharacterized protein.	0.674
ARHGAP42	FBXO21	ENSOARP00000008108	ENSOARP00000005170	Rho GTPase activating protein 42.	F-box protein 21.	0.861
ARHGAP42	LOC101108746	ENSOARP00000008108	ENSOARP00000018051	Rho GTPase activating protein 42.	Olfactory receptor.	0.914
ARHGAP42	LOC101115916	ENSOARP00000008108	ENSOARP00000009565	Rho GTPase activating protein 42.	Olfactory receptor.	0.483
ARHGAP42	LOC101116944	ENSOARP00000008108	ENSOARP00000009580	Rho GTPase activating protein 42.	Olfactory receptor.	0.483
ARHGAP42	LOC114109573	ENSOARP00000008108	ENSOARP00000017051	Rho GTPase activating protein 42.	Olfactory receptor.	0.483
ARHGAP42	LOC114109604	ENSOARP00000008108	ENSOARP00000018397	Rho GTPase activating protein 42.	Olfactory receptor.	0.483
ARHGAP42	MAIP1	ENSOARP00000008108	ENSOARP00000017110	Rho GTPase activating protein 42.	Matrix AAA peptidase interacting protein 1.	0.928