8 items (Ovis aries) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB5B	RAB5B, member RAS oncogene family. (227 aa)
	RAB35	RAB35, member RAS oncogene family. (202 aa)
	USP6NL	USP6 N-terminal like. (757 aa)
	W5Q7G9_SHEEP	Rab-GAP TBC domain-containing protein. (315 aa)
	SGSM3	Small G protein signaling modulator 3. (744 aa)
	RAB5C	Uncharacterized protein. (216 aa)
	SORT1	Sortilin. (965 aa)
	COMMD1	Copper metabolism domain containing 1. (188 aa)

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RAB5B	RAB5C	ENSOARP00000011427	ENSOARP00000020155	RAB5B, member RAS oncogene family.	Uncharacterized protein.	0.942
RAB5B	USP6NL	ENSOARP00000011427	ENSOARP00000015241	RAB5B, member RAS oncogene family.	USP6 N-terminal like.	0.450
RAB5B	W5Q7G9_SHEEP	ENSOARP00000011427	ENSOARP00000018661	RAB5B, member RAS oncogene family.	Rab-GAP TBC domain-containing protein.	0.450
RAB5C	RAB5B	ENSOARP00000020155	ENSOARP00000011427	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.942
RAB5C	USP6NL	ENSOARP00000020155	ENSOARP00000015241	Uncharacterized protein.	USP6 N-terminal like.	0.450
RAB5C	W5Q7G9_SHEEP	ENSOARP00000020155	ENSOARP00000018661	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.450
USP6NL	RAB5B	ENSOARP00000015241	ENSOARP00000011427	USP6 N-terminal like.	RAB5B, member RAS oncogene family.	0.450
USP6NL	RAB5C	ENSOARP00000015241	ENSOARP00000020155	USP6 N-terminal like.	Uncharacterized protein.	0.450
W5Q7G9_SHEEP	RAB5B	ENSOARP00000018661	ENSOARP00000011427	Rab-GAP TBC domain-containing protein.	RAB5B, member RAS oncogene family.	0.450
W5Q7G9_SHEEP	RAB5C	ENSOARP00000018661	ENSOARP00000020155	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.450