(11 nodes) Mixed, incl. Protein secretion by the type III secretion system, and SMAD/FHA domain superfamily network (Pseudomonas brassicacearum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AEA71874.1	Putative type III secretion protein. (295 aa)
	AEA71880.1	Putative type III secretion protein. (716 aa)
	AEA71885.1	Putative type III secretion protein, putative membrane protein. (366 aa)
	AEA71886.1	Putative type III secretion protein. (265 aa)
	AEA71887.1	Putative type III secretion protein. (84 aa)
	AEA71888.1	Putative type III secretion protein. (217 aa)
	AEA71891.1	Putative type III secretion protein. (139 aa)
	AEA71892.1	Putative type III secretion protein. (452 aa)
	AEA71893.1	Putative type III secretion protein. (297 aa)
	AEA71894.1	Putative type III secretion protein, putative membrane protein. (695 aa)
	AEA71895.1	Putative type III secretion protein. (375 aa)

Your Current Organism:

Pseudomonas brassicacearum

NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEA71874.1	AEA71880.1	PSEBR_a5370	PSEBR_a5375	Putative type III secretion protein.	Putative type III secretion protein.	0.984
AEA71874.1	AEA71885.1	PSEBR_a5370	PSEBR_a5379	Putative type III secretion protein.	Putative type III secretion protein, putative membrane protein.	0.947
AEA71874.1	AEA71886.1	PSEBR_a5370	PSEBR_a5380	Putative type III secretion protein.	Putative type III secretion protein.	0.986
AEA71874.1	AEA71887.1	PSEBR_a5370	PSEBR_a5381	Putative type III secretion protein.	Putative type III secretion protein.	0.986
AEA71874.1	AEA71888.1	PSEBR_a5370	PSEBR_a5382	Putative type III secretion protein.	Putative type III secretion protein.	0.984
AEA71874.1	AEA71892.1	PSEBR_a5370	PSEBR_a5386	Putative type III secretion protein.	Putative type III secretion protein.	0.875
AEA71874.1	AEA71893.1	PSEBR_a5370	PSEBR_a5387	Putative type III secretion protein.	Putative type III secretion protein.	0.828
AEA71874.1	AEA71894.1	PSEBR_a5370	PSEBR_a5388	Putative type III secretion protein.	Putative type III secretion protein, putative membrane protein.	0.978
AEA71874.1	AEA71895.1	PSEBR_a5370	PSEBR_a5389	Putative type III secretion protein.	Putative type III secretion protein.	0.874
AEA71880.1	AEA71874.1	PSEBR_a5375	PSEBR_a5370	Putative type III secretion protein.	Putative type III secretion protein.	0.984
AEA71880.1	AEA71885.1	PSEBR_a5375	PSEBR_a5379	Putative type III secretion protein.	Putative type III secretion protein, putative membrane protein.	0.875
AEA71880.1	AEA71886.1	PSEBR_a5375	PSEBR_a5380	Putative type III secretion protein.	Putative type III secretion protein.	0.970
AEA71880.1	AEA71887.1	PSEBR_a5375	PSEBR_a5381	Putative type III secretion protein.	Putative type III secretion protein.	0.960
AEA71880.1	AEA71888.1	PSEBR_a5375	PSEBR_a5382	Putative type III secretion protein.	Putative type III secretion protein.	0.938
AEA71880.1	AEA71892.1	PSEBR_a5375	PSEBR_a5386	Putative type III secretion protein.	Putative type III secretion protein.	0.832
AEA71880.1	AEA71893.1	PSEBR_a5375	PSEBR_a5387	Putative type III secretion protein.	Putative type III secretion protein.	0.479
AEA71880.1	AEA71894.1	PSEBR_a5375	PSEBR_a5388	Putative type III secretion protein.	Putative type III secretion protein, putative membrane protein.	0.910
AEA71880.1	AEA71895.1	PSEBR_a5375	PSEBR_a5389	Putative type III secretion protein.	Putative type III secretion protein.	0.474
AEA71885.1	AEA71874.1	PSEBR_a5379	PSEBR_a5370	Putative type III secretion protein, putative membrane protein.	Putative type III secretion protein.	0.947
AEA71885.1	AEA71880.1	PSEBR_a5379	PSEBR_a5375	Putative type III secretion protein, putative membrane protein.	Putative type III secretion protein.	0.875

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