11 items (Calothrix sp. PCC7507) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFY35306.1	PFAM: Glycosyl hydrolase family 57; COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: ana:alr1310 hypothetical protein; PFAM: Glycoside hydrolase, family 57, N-terminal; SPTR: Alr1310 protein. (744 aa)
	AFY35813.1	PFAM: Glycosyl hydrolase family 57; Domain of unknown function (DUF3536); COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: ava:Ava_4559 glycoside hydrolase family protein; PFAM: Glycoside hydrolase, family 57, N-terminal; SPTR: Glycoside hydrolase, family 57. (889 aa)
	AFY30912.1	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ana:alr1669 hypothetical protein; PFAM: Polysaccharide deacetylase; SPTR: Alr1669 protein. (223 aa)
	AFY32298.1	PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57; COGs: COG1543 conserved hypothetical protein; InterPro IPR004300:IPR015293; KEGG: ava:Ava_0382 glycoside hydrolase family protein; PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, N-terminal; SPTR: (1->4)-alpha-D-glucan branching enzyme. (529 aa)
	AFY32875.1	KEGG: npu:Npun_R1017 hypothetical protein; SPTR: Putative uncharacterized protein. (490 aa)
	AFY33338.1	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: ava:Ava_1295 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase. (307 aa)
	AFY33594.1	Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain; COGs: COG0383 Alpha-mannosidase; InterPro IPR000602:IPR015341:IPR011682; KEGG: npu:Npun_F4313 glycosyl hydrolase 38 protein; PFAM: Glycosyl hydrolases 38, C-terminal; Glycoside hydrolase, family 38, core; Glycoside hydrolase, family 38, central domain; PRIAM: Alpha-mannosidase; SMART: Glycoside hydrolase, family 38, central domain; SPTR: Glycosyl hydrolase 38 domain protein. (1044 aa)
	AFY34274.1	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: npu:Npun_F0991 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase. (301 aa)
	AFY34275.1	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein. (290 aa)
	AFY34552.1	PFAM: YdjC-like protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK; COGs: COG3394 conserved hypothetical protein; InterPro IPR017836:IPR006879; KEGG: amr:AM1_5796 YdjC-like protein; PFAM: Uncharacterised protein family UPF0249/HpnK; SPTR: YdjC-like protein; TIGRFAM: Hopanoid biosynthesis associated protein HpnK. (290 aa)
	AFY34737.1	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: npu:Npun_F2776 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase. (305 aa)

Your Current Organism:

Calothrix sp. PCC7507

NCBI taxonomy Id: 99598
Other names: C. sp. PCC 7507, Calothrix sp. PCC 7507

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFY34274.1	AFY34275.1	Cal7507_3886	Cal7507_3887	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: npu:Npun_F0991 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase.	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein.	0.539
AFY34275.1	AFY34274.1	Cal7507_3887	Cal7507_3886	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: cyb:CYB_1488 polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase family protein.	PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: npu:Npun_F0991 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase.	0.539