16 items (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SF3B3	Splicing factor 3b subunit 3. (1189 aa)
	DDX42	DEAD-box helicase 42. (947 aa)
	SF3B4	Splicing factor 3b subunit 4. (424 aa)
	SF3A3	Splicing factor 3a subunit 3. (501 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	SF3B2	Splicing factor 3b subunit 2. (869 aa)
	DDX46	DEAD-box helicase 46. (1032 aa)
	HTATSF1	HIV-1 Tat specific factor 1. (785 aa)
	SF3B6	Splicing factor 3b subunit 6. (125 aa)
	SF3B1	SF3b1 domain-containing protein. (1120 aa)
	SF1	CCHC-type domain-containing protein. (630 aa)
	SF3A1	Splicing factor 3a subunit 1. (917 aa)
	BLACAT1	Bladder cancer associated transcript 1. (33 aa)
	ENSOCUP00000033150	Uncharacterized protein. (70 aa)
	PHF5A	PHD finger protein 5A. (173 aa)
	SF3B1-2	Uncharacterized protein. (154 aa)

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLACAT1	DDX46	ENSOCUP00000029030	ENSOCUP00000010511	Bladder cancer associated transcript 1.	DEAD-box helicase 46.	0.823
BLACAT1	ENSOCUP00000033150	ENSOCUP00000029030	ENSOCUP00000033150	Bladder cancer associated transcript 1.	Uncharacterized protein.	0.866
BLACAT1	HTATSF1	ENSOCUP00000029030	ENSOCUP00000010819	Bladder cancer associated transcript 1.	HIV-1 Tat specific factor 1.	0.721
BLACAT1	PHF5A	ENSOCUP00000029030	ENSOCUP00000042841	Bladder cancer associated transcript 1.	PHD finger protein 5A.	0.983
BLACAT1	SF1	ENSOCUP00000029030	ENSOCUP00000025531	Bladder cancer associated transcript 1.	CCHC-type domain-containing protein.	0.921
BLACAT1	SF3A1	ENSOCUP00000029030	ENSOCUP00000028450	Bladder cancer associated transcript 1.	Splicing factor 3a subunit 1.	0.673
BLACAT1	SF3A3	ENSOCUP00000029030	ENSOCUP00000004692	Bladder cancer associated transcript 1.	Splicing factor 3a subunit 3.	0.497
BLACAT1	SF3B1	ENSOCUP00000029030	ENSOCUP00000021051	Bladder cancer associated transcript 1.	SF3b1 domain-containing protein.	0.866
BLACAT1	SF3B1-2	ENSOCUP00000029030	ENSOCUP00000049862	Bladder cancer associated transcript 1.	Uncharacterized protein.	0.866
BLACAT1	SF3B2	ENSOCUP00000029030	ENSOCUP00000008547	Bladder cancer associated transcript 1.	Splicing factor 3b subunit 2.	0.987
BLACAT1	SF3B3	ENSOCUP00000029030	ENSOCUP00000003584	Bladder cancer associated transcript 1.	Splicing factor 3b subunit 3.	0.988
BLACAT1	SF3B4	ENSOCUP00000029030	ENSOCUP00000003976	Bladder cancer associated transcript 1.	Splicing factor 3b subunit 4.	0.994
BLACAT1	SF3B5	ENSOCUP00000029030	ENSOCUP00000007556	Bladder cancer associated transcript 1.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.984
BLACAT1	SF3B6	ENSOCUP00000029030	ENSOCUP00000017726	Bladder cancer associated transcript 1.	Splicing factor 3b subunit 6.	0.976
DDX42	DDX46	ENSOCUP00000003725	ENSOCUP00000010511	DEAD-box helicase 42.	DEAD-box helicase 46.	0.657
DDX42	ENSOCUP00000033150	ENSOCUP00000003725	ENSOCUP00000033150	DEAD-box helicase 42.	Uncharacterized protein.	0.922
DDX42	HTATSF1	ENSOCUP00000003725	ENSOCUP00000010819	DEAD-box helicase 42.	HIV-1 Tat specific factor 1.	0.433
DDX42	PHF5A	ENSOCUP00000003725	ENSOCUP00000042841	DEAD-box helicase 42.	PHD finger protein 5A.	0.917
DDX42	SF3A1	ENSOCUP00000003725	ENSOCUP00000028450	DEAD-box helicase 42.	Splicing factor 3a subunit 1.	0.730
DDX42	SF3A3	ENSOCUP00000003725	ENSOCUP00000004692	DEAD-box helicase 42.	Splicing factor 3a subunit 3.	0.685