(4 nodes) RNA polymerase I core promoter sequence-specific DNA binding network (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAF1B	TATA-box binding protein associated factor, RNA polymerase I subunit B. (613 aa)
	PIH1D1	PIH1 domain containing 1. (291 aa)
	UBTF	Upstream binding transcription factor. (777 aa)
	TAF1C	Uncharacterized protein. (185 aa)

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TAF1B	TAF1C	ENSOCUP00000040708	ENSOCUP00000025540	TATA-box binding protein associated factor, RNA polymerase I subunit B.	Uncharacterized protein.	0.990
TAF1B	UBTF	ENSOCUP00000040708	ENSOCUP00000049324	TATA-box binding protein associated factor, RNA polymerase I subunit B.	Upstream binding transcription factor.	0.601
TAF1C	TAF1B	ENSOCUP00000025540	ENSOCUP00000040708	Uncharacterized protein.	TATA-box binding protein associated factor, RNA polymerase I subunit B.	0.990
TAF1C	UBTF	ENSOCUP00000025540	ENSOCUP00000049324	Uncharacterized protein.	Upstream binding transcription factor.	0.741
UBTF	TAF1B	ENSOCUP00000049324	ENSOCUP00000040708	Upstream binding transcription factor.	TATA-box binding protein associated factor, RNA polymerase I subunit B.	0.601
UBTF	TAF1C	ENSOCUP00000049324	ENSOCUP00000025540	Upstream binding transcription factor.	Uncharacterized protein.	0.741