35 items (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPF	Small nuclear ribonucleoprotein polypeptide F. (86 aa)
	SNRPG	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
	SNRNP25	Small nuclear ribonucleoprotein U11/U12 subunit 25. (132 aa)
	SNRPB	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	DHX15	DEAH-box helicase 15. (795 aa)
	SF3B3	Splicing factor 3b subunit 3. (1189 aa)
	ZRSR2	Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (485 aa)
	SF3B4	Splicing factor 3b subunit 4. (424 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
	SNRNP35	Small nuclear ribonucleoprotein U11/U12 subunit 35. (247 aa)
	SNRPD2	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
	G1TGF3_RABIT	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	SNRNP48	Small nuclear ribonucleoprotein U11/U12 subunit 48. (323 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	RBM41	RNA binding motif protein 41. (406 aa)
	SF3B6	Splicing factor 3b subunit 6. (125 aa)
	G1TPR7_RABIT	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	G1TQQ8_RABIT	Uncharacterized protein. (246 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
	SF3B1	SF3b1 domain-containing protein. (1120 aa)
	G1TXZ2_RABIT	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
	G1U7T7_RABIT	Small nuclear ribonucleoprotein-associated protein. (218 aa)
	PDCD7	Programmed cell death 7. (448 aa)
	ZMAT5	Zinc finger matrin-type 5. (210 aa)
	SNRPD2-2	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (112 aa)
	ENSOCUP00000033150	Uncharacterized protein. (70 aa)
	SNRPD2-3	Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (69 aa)
	RNPC3	RNA binding region (RNP1, RRM) containing 3. (591 aa)
	ENSOCUP00000040270	Uncharacterized protein. (120 aa)
	PHF5A	PHD finger protein 5A. (173 aa)
	LOC100340830	Uncharacterized protein. (217 aa)
	ZCRB1	Uncharacterized protein. (288 aa)
	ENSOCUP00000044479	Uncharacterized protein. (139 aa)
	SF3B1-2	Uncharacterized protein. (154 aa)
	SF3B2	Splicing factor 3b subunit 2. (869 aa)

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSOCUP00000033150	ENSOCUP00000002633	ENSOCUP00000033150	DEAH-box helicase 15.	Uncharacterized protein.	0.835
DHX15	ENSOCUP00000040270	ENSOCUP00000002633	ENSOCUP00000040270	DEAH-box helicase 15.	Uncharacterized protein.	0.911
DHX15	ENSOCUP00000044479	ENSOCUP00000002633	ENSOCUP00000044479	DEAH-box helicase 15.	Uncharacterized protein.	0.473
DHX15	G1TGF3_RABIT	ENSOCUP00000002633	ENSOCUP00000016003	DEAH-box helicase 15.	Small nuclear ribonucleoprotein-associated protein.	0.649
DHX15	G1TPR7_RABIT	ENSOCUP00000002633	ENSOCUP00000019004	DEAH-box helicase 15.	Small nuclear ribonucleoprotein-associated protein.	0.649
DHX15	G1TQQ8_RABIT	ENSOCUP00000002633	ENSOCUP00000019354	DEAH-box helicase 15.	Uncharacterized protein.	0.473
DHX15	G1TXZ2_RABIT	ENSOCUP00000002633	ENSOCUP00000021950	DEAH-box helicase 15.	Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing.	0.909
DHX15	G1U7T7_RABIT	ENSOCUP00000002633	ENSOCUP00000025496	DEAH-box helicase 15.	Small nuclear ribonucleoprotein-associated protein.	0.649
DHX15	LOC100340830	ENSOCUP00000002633	ENSOCUP00000044212	DEAH-box helicase 15.	Uncharacterized protein.	0.473
DHX15	PHF5A	ENSOCUP00000002633	ENSOCUP00000042841	DEAH-box helicase 15.	PHD finger protein 5A.	0.977
DHX15	RBM41	ENSOCUP00000002633	ENSOCUP00000013685	DEAH-box helicase 15.	RNA binding motif protein 41.	0.663
DHX15	RNPC3	ENSOCUP00000002633	ENSOCUP00000035273	DEAH-box helicase 15.	RNA binding region (RNP1, RRM) containing 3.	0.664
DHX15	SF3B1	ENSOCUP00000002633	ENSOCUP00000021051	DEAH-box helicase 15.	SF3b1 domain-containing protein.	0.839
DHX15	SF3B1-2	ENSOCUP00000002633	ENSOCUP00000049862	DEAH-box helicase 15.	Uncharacterized protein.	0.835
DHX15	SF3B2	ENSOCUP00000002633	ENSOCUP00000008547	DEAH-box helicase 15.	Splicing factor 3b subunit 2.	0.891
DHX15	SF3B3	ENSOCUP00000002633	ENSOCUP00000003584	DEAH-box helicase 15.	Splicing factor 3b subunit 3.	0.927
DHX15	SF3B4	ENSOCUP00000002633	ENSOCUP00000003976	DEAH-box helicase 15.	Splicing factor 3b subunit 4.	0.899
DHX15	SF3B5	ENSOCUP00000002633	ENSOCUP00000007556	DEAH-box helicase 15.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.799
DHX15	SF3B6	ENSOCUP00000002633	ENSOCUP00000017726	DEAH-box helicase 15.	Splicing factor 3b subunit 6.	0.804
DHX15	SNRNP35	ENSOCUP00000002633	ENSOCUP00000016734	DEAH-box helicase 15.	Small nuclear ribonucleoprotein U11/U12 subunit 35.	0.588