STRINGSTRING
LOC100357100 LOC100357100 METTL3 METTL3 RCC1L RCC1L HNRNPD HNRNPD NAT10 NAT10 ABCF1 ABCF1 RBM3 RBM3 RMND1 RMND1 METTL14 METTL14 SAMD4A SAMD4A THBS1 THBS1 BARHL2 BARHL2 IGF2BP1 IGF2BP1 EIF2B5 EIF2B5 RPS6KB1 RPS6KB1 RBM4 RBM4 TARBP2 TARBP2 PKM PKM PIWIL2 PIWIL2 PINK1 PINK1 EIF3D EIF3D TENT5B TENT5B PRR16 PRR16 EIF2AK4 EIF2AK4 MIF4GD MIF4GD TNF TNF KHDRBS1 KHDRBS1 NCK1 NCK1 UPF3A UPF3A VIM VIM POLR2G POLR2G RPL5 RPL5 UPF3B UPF3B G1SZ30_RABIT G1SZ30_RABIT METTL5 METTL5 G1SZF4_RABIT G1SZF4_RABIT ERBB2 ERBB2 EIF6 EIF6 TRMT10C TRMT10C MTOR MTOR NSUN5 NSUN5 LARP1B LARP1B IMPACT IMPACT BOLL BOLL PLD1 PLD1 FMR1 FMR1 ELAVL1 ELAVL1 COA3 COA3 ZCCHC4 ZCCHC4 PCIF1 PCIF1 POLDIP3 POLDIP3 CYP1B1 CYP1B1 TENT4A TENT4A RPUSD4 RPUSD4 UCN UCN DNAJC3 DNAJC3 GUF1 GUF1 YTHDF2 YTHDF2 G1TID8_RABIT G1TID8_RABIT SYNCRIP SYNCRIP CPEB3 CPEB3 G1TL38_RABIT G1TL38_RABIT TRUB2 TRUB2 LOC100351224 LOC100351224 PTK2B PTK2B HABP4 HABP4 G1TXL6_RABIT G1TXL6_RABIT G1TXR9_RABIT G1TXR9_RABIT LARP4 LARP4 G1U0P1_RABIT G1U0P1_RABIT ZCCHC13 ZCCHC13 LARP6 LARP6 ENSOCUP00000023367 ENSOCUP00000023367 DHX29 DHX29 NCK2 NCK2 HNRNPL HNRNPL POLR2D POLR2D NGRN NGRN G1U895_RABIT G1U895_RABIT JMJD4 JMJD4 U3KMZ1_RABIT U3KMZ1_RABIT YTHDF1 YTHDF1 PYM1 PYM1 ENSOCUP00000028473 ENSOCUP00000028473 CTIF CTIF ITGA2 ITGA2 UHMK1 UHMK1 DHX9 DHX9 CNBP CNBP ENSOCUP00000030956 ENSOCUP00000030956 CSDE1 CSDE1 USP16 USP16 ENSOCUP00000032166 ENSOCUP00000032166 ENSOCUP00000032325 ENSOCUP00000032325 BCL3 BCL3 EIF4G1 EIF4G1 ENSOCUP00000033056 ENSOCUP00000033056 ENSOCUP00000033566 ENSOCUP00000033566 EIF5A EIF5A PAIP1 PAIP1 ENSOCUP00000033861 ENSOCUP00000033861 ENSOCUP00000034123 ENSOCUP00000034123 MIEF1 MIEF1 LARP4B LARP4B ENSOCUP00000038512 ENSOCUP00000038512 LARP1 LARP1 MRPS27 MRPS27 UQCC2 UQCC2 TENT4B TENT4B ENSOCUP00000040691 ENSOCUP00000040691 FXR2 FXR2 ENSOCUP00000041421 ENSOCUP00000041421 FASTKD3 FASTKD3 FXR1 FXR1 METTL8 METTL8 NIBAN1 NIBAN1 DHX36 DHX36 CDK5RAP1 CDK5RAP1 ENSOCUP00000044693 ENSOCUP00000044693 ENSOCUP00000044790 ENSOCUP00000044790 HNRNPU HNRNPU RPL22L1 RPL22L1 ENSOCUP00000045683 ENSOCUP00000045683 FASTKD2 FASTKD2 ENSOCUP00000048602 ENSOCUP00000048602 YTHDF3 YTHDF3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100357100CCHC-type domain-containing protein. (209 aa)
METTL3Methyltransferase like 3; Belongs to the MT-A70-like family. (580 aa)
RCC1LRCC1 like. (495 aa)
HNRNPDHeterogeneous nuclear ribonucleoprotein D. (286 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1030 aa)
ABCF1ATP binding cassette subfamily F member 1. (846 aa)
RBM3RNA binding motif protein 3. (156 aa)
RMND1Required for meiotic nuclear division 1 homolog. (449 aa)
METTL14Methyltransferase like 14; Belongs to the MT-A70-like family. (434 aa)
SAMD4ASterile alpha motif domain containing 4A. (700 aa)
THBS1Thrombospondin 1. (1171 aa)
BARHL2BarH like homeobox 2. (387 aa)
IGF2BP1Insulin like growth factor 2 mRNA binding protein 1. (570 aa)
EIF2B5Translation initiation factor eIF-2B subunit epsilon; Catalyzes the exchange of eukaryotic initiation factor 2- bound GDP for GTP. (729 aa)
RPS6KB1Ribosomal protein S6 kinase beta-1; Serine/threonine-protein kinase that acts downstream of mTOR signaling in response to growth factors and nutrients to promote cell proliferation, cell growth and cell cycle progression. Regulates protein synthesis through phosphorylation of EIF4B, RPS6 and EEF2K, and contributes to cell survival by repressing the pro-apoptotic function of BAD. Under conditions of nutrient depletion, the inactive form associates with the EIF3 translation initiation complex. Upon mitogenic stimulation, phosphorylation by the mammalian target of rapamycin complex 1 (mTO [...] (490 aa)
RBM4RNA-binding protein 4; RNA-binding factor involved in multiple aspects of cellular processes like alternative splicing of pre-mRNA and translation regulation. Modulates alternative 5'-splice site and exon selection. Acts as a muscle cell differentiation-promoting factor. Activates exon skipping of the PTB pre-mRNA during muscle cell differentiation. Antagonizes the activity of the splicing factor PTBP1 to modulate muscle cell-specific exon selection of alpha tropomyosin. Binds to intronic pyrimidine-rich sequence of the TPM1 and MAPT pre-mRNAs. Required for the translational activation [...] (365 aa)
TARBP2RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (366 aa)
PKMPyruvate kinase PKM; Glycolytic enzyme that catalyzes the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) to ADP, generating ATP (By similarity). Stimulates POU5F1-mediated transcriptional activation (By similarity). Promotes in a STAT1-dependent manner, the expression of the immune checkpoint protein CD274 in ARNTL/BMAL1-deficient macrophages (By similarity). (529 aa)
PIWIL2Piwi like RNA-mediated gene silencing 2; Belongs to the argonaute family. (971 aa)
PINK1PTEN induced kinase 1. (569 aa)
EIF3DEukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, a complex required for several steps in the initiation of protein synthesis of a specialized repertoire of mRNAs. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl- tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required [...] (557 aa)
TENT5BUncharacterized protein. (428 aa)
PRR16Proline rich 16. (304 aa)
EIF2AK4Eukaryotic translation initiation factor 2 alpha kinase 4. (1651 aa)
MIF4GDMIF4G domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (490 aa)
TNFTumor necrosis factor, membrane form; Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. It is mainly secreted by macrophages and can induce cell death of certain tumor cell lines. It is potent pyrogen causing fever by direct action or by stimulation of interleukin-1 secretion and is implicated in the induction of cachexia, Under certain conditions it can stimulate cell proliferation and induce cell differentiation (By similarity). Induces insulin resistance in adipocytes via inhibition of insulin-induced IRS1 tyrosine phosphorylation and insulin-induced glucose uptake. Induces [...] (234 aa)
KHDRBS1KH RNA binding domain containing, signal transduction associated 1. (443 aa)
NCK1Cytoplasmic protein. (377 aa)
UPF3ASmg4_UPF3 domain-containing protein. (196 aa)
VIMVimentin; Belongs to the intermediate filament family. (466 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
RPL560S ribosomal protein L5. (297 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (483 aa)
G1SZ30_RABITRibosomal_L18_c domain-containing protein. (297 aa)
METTL5Methyltransferase like 5. (209 aa)
G1SZF4_RABITRibosomal_L18_c domain-containing protein. (297 aa)
ERBB2Receptor protein-tyrosine kinase. (1255 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Behaves as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (RACK1)- dependent protein kinase C activity. In tissues responsive to insulin, contro [...] (245 aa)
TRMT10CtRNA methyltransferase 10C, mitochondrial RNase P subunit. (424 aa)
MTORSerine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family. (2547 aa)
NSUN5Uncharacterized protein. (101 aa)
LARP1BLa ribonucleoprotein domain family member 1B. (919 aa)
IMPACTProtein IMPACT; Translational regulator that ensures constant high levels of translation upon a variety of stress conditions, such as amino acid starvation, UV-C irradiation, proteasome inhibitor treatment and glucose deprivation. Plays a role as a negative regulator of the EIF2AK4/GCN2 kinase activity; impairs GCN1-mediated EIF2AK4/GCN2 activation, and hence EIF2AK4/GCN2-mediated eIF-2-alpha phosphorylation and subsequent down-regulation of protein synthesis. May be required to regulate translation in specific neuronal cells under amino acid starvation conditions by preventing GCN2 ac [...] (449 aa)
BOLLBoule homolog, RNA binding protein. (296 aa)
PLD1Phospholipase. (1031 aa)
FMR1Fragile X mental retardation 1. (632 aa)
ELAVL1ELAV-like protein; Belongs to the RRM elav family. (382 aa)
COA3Cytochrome c oxidase assembly factor 3. (106 aa)
ZCCHC4Zinc finger CCHC-type containing 4. (511 aa)
PCIF1PDX1 C-terminal inhibiting factor 1. (703 aa)
POLDIP3DNA polymerase delta interacting protein 3. (420 aa)
CYP1B1Cytochrome P450 family 1 subfamily B member 1; Belongs to the cytochrome P450 family. (542 aa)
TENT4ATerminal nucleotidyltransferase 4A. (542 aa)
RPUSD4RNA pseudouridine synthase D4. (367 aa)
UCNUrocortin. (128 aa)
DNAJC3DnaJ heat shock protein family (Hsp40) member C3. (497 aa)
GUF1Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (665 aa)
YTHDF2YTH N6-methyladenosine RNA binding protein 2. (579 aa)
G1TID8_RABITHTH La-type RNA-binding domain-containing protein. (705 aa)
SYNCRIPUncharacterized protein. (623 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (713 aa)
G1TL38_RABITRRM domain-containing protein. (85 aa)
TRUB2Uncharacterized protein. (459 aa)
LOC100351224RAP domain-containing protein. (658 aa)
PTK2BProtein tyrosine kinase 2 beta; Belongs to the protein kinase superfamily. Tyr protein kinase family. (996 aa)
HABP4HABP4_PAI-RBP1 domain-containing protein. (182 aa)
G1TXL6_RABITPseudoU_synth_2 domain-containing protein. (434 aa)
G1TXR9_RABITEukaryotic translation initiation factor 5A. (114 aa)
LARP4HTH La-type RNA-binding domain-containing protein. (725 aa)
G1U0P1_RABITUncharacterized protein. (209 aa)
ZCCHC13Uncharacterized protein. (84 aa)
LARP6La ribonucleoprotein domain family member 6. (552 aa)
ENSOCUP00000023367annotation not available (209 aa)
DHX29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)
NCK2Cytoplasmic protein. (380 aa)
HNRNPLHeterogeneous nuclear ribonucleoprotein L; Belongs to the enoyl-CoA hydratase/isomerase family. (763 aa)
POLR2DRPOL4c domain-containing protein. (110 aa)
NGRNNeugrin, neurite outgrowth associated. (283 aa)
G1U895_RABITRPOL4c domain-containing protein. (122 aa)
JMJD4Jumonji domain containing 4. (560 aa)
U3KMZ1_RABITMIF4G domain-containing protein. (342 aa)
YTHDF1YTH N6-methyladenosine RNA binding protein 1. (652 aa)
PYM1PYM homolog 1, exon junction complex associated factor. (204 aa)
ENSOCUP00000028473Mab-21 domain-containing protein. (169 aa)
CTIFCap binding complex dependent translation initiation factor. (597 aa)
ITGA2Integrin subunit alpha 2; Belongs to the integrin alpha chain family. (1202 aa)
UHMK1U2AF homology motif kinase 1. (419 aa)
DHX9DExH-box helicase 9. (1298 aa)
CNBPUncharacterized protein. (177 aa)
ENSOCUP00000030956Uncharacterized protein. (97 aa)
CSDE1Cold shock domain containing E1. (851 aa)
USP16Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (851 aa)
ENSOCUP00000032166Uncharacterized protein. (108 aa)
ENSOCUP00000032325RPOL4c domain-containing protein. (146 aa)
BCL3BCL3 transcription coactivator. (547 aa)
EIF4G1Eukaryotic translation initiation factor 4 gamma 1; Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. (1608 aa)
ENSOCUP00000033056PK domain-containing protein. (265 aa)
ENSOCUP00000033566Tudor_FRX1 domain-containing protein. (52 aa)
EIF5AEukaryotic translation initiation factor 5A-1; mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. With syntenin SDCBP, functions as a regulator of p53/TP53 and p53/TP53-dependent apoptosis. Regulates also TNF-alpha-mediated apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an import [...] (154 aa)
PAIP1MIF4G domain-containing protein. (520 aa)
ENSOCUP00000033861Uncharacterized protein. (218 aa)
ENSOCUP00000034123Uncharacterized protein. (421 aa)
MIEF1Mab-21 domain-containing protein. (600 aa)
LARP4BHTH La-type RNA-binding domain-containing protein. (1726 aa)
ENSOCUP00000038512Uncharacterized protein. (161 aa)
LARP1La ribonucleoprotein domain family member 1. (1261 aa)
MRPS27Mitochondrial ribosomal protein S27. (438 aa)
UQCC2Ubiquinol-cytochrome c reductase complex assembly factor 2. (136 aa)
TENT4BTerminal nucleotidyltransferase 4B. (471 aa)
ENSOCUP00000040691Uncharacterized protein. (65 aa)
FXR2FMR1 autosomal homolog 2. (649 aa)
ENSOCUP00000041421CCHC-type domain-containing protein. (189 aa)
FASTKD3FAST kinase domains 3. (706 aa)
FXR1FMR1 autosomal homolog 1. (781 aa)
METTL8Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family. (407 aa)
NIBAN1Niban apoptosis regulator 1. (829 aa)
DHX36DEAH-box helicase 36. (1468 aa)
CDK5RAP1CDK5 regulatory subunit associated protein 1. (641 aa)
ENSOCUP00000044693HTH La-type RNA-binding domain-containing protein. (633 aa)
ENSOCUP00000044790RPOL4c domain-containing protein. (134 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (844 aa)
RPL22L1Eukaryotic translation initiation factor 5A. (167 aa)
ENSOCUP00000045683Pyruvate kinase; Belongs to the pyruvate kinase family. (144 aa)
FASTKD2RAP domain-containing protein. (680 aa)
ENSOCUP00000048602Ribosomal_L18_c domain-containing protein. (169 aa)
YTHDF3YTH N6-methyladenosine RNA binding protein 3. (602 aa)
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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