STRINGSTRING
RBM24 RBM24 KHDRBS3 KHDRBS3 SUPT6H SUPT6H SRSF12 SRSF12 RBFOX1 RBFOX1 CELF1 CELF1 G1SFQ9_RABIT G1SFQ9_RABIT ACIN1 ACIN1 REST REST RBM23 RBM23 SFSWAP SFSWAP RBM3 RBM3 RBM15 RBM15 SLTM SLTM RBM7 RBM7 CELF3 CELF3 SON SON QKI QKI SF3B4 SF3B4 RBM4 RBM4 IWS1 IWS1 CELF2 CELF2 DDX17 DDX17 SRSF3 SRSF3 NCBP2 NCBP2 SRPK2 SRPK2 LARP7 LARP7 LOC100358894 LOC100358894 KHDRBS1 KHDRBS1 SNW1 SNW1 AHCYL1 AHCYL1 SRSF6 SRSF6 TIA1 TIA1 RBM5 RBM5 KHDRBS2 KHDRBS2 SAP18 SAP18 CPSF6 CPSF6 RBM25 RBM25 NCBP1 NCBP1 RBFOX3 RBFOX3 FMR1 FMR1 SNRNP70 SNRNP70 ZC3H14 ZC3H14 PRPF19 PRPF19 YTHDC1 YTHDC1 CDC73 CDC73 VIRMA VIRMA RBM20 RBM20 NUDT21 NUDT21 ZC3H10 ZC3H10 NOVA1 NOVA1 G1TFE3_RABIT G1TFE3_RABIT RBM39 RBM39 CPSF7 CPSF7 LOC100347836 LOC100347836 CPEB3 CPEB3 RBMXL2 RBMXL2 G1TL38_RABIT G1TL38_RABIT SNRPA SNRPA G1TQQ3_RABIT G1TQQ3_RABIT RAVER1 RAVER1 METTL16 METTL16 G1TSJ3_RABIT G1TSJ3_RABIT RAVER2 RAVER2 NOVA2 NOVA2 G1TTW4_RABIT G1TTW4_RABIT NCL NCL G1TWF5_RABIT G1TWF5_RABIT HNRNPA2B1 HNRNPA2B1 RBM8A RBM8A TRA2A TRA2A RBM10 RBM10 G1U223_RABIT G1U223_RABIT PCBP4 PCBP4 SRRM4 SRRM4 HNRNPL HNRNPL MYOD1 MYOD1 SRSF9 SRSF9 SF1 SF1 RBM15B RBM15B SRSF10 SRSF10 SMU1 SMU1 CPEB1 CPEB1 THRAP3 THRAP3 ENSOCUP00000029090 ENSOCUP00000029090 TRA2B TRA2B DHX9 DHX9 SRSF7 SRSF7 ENSOCUP00000031127 ENSOCUP00000031127 CELF4 CELF4 ENSOCUP00000031966 ENSOCUP00000031966 HSF1 HSF1 PAF1 PAF1 DYRK1A DYRK1A SAFB SAFB ENSOCUP00000033566 ENSOCUP00000033566 MBNL2 MBNL2 SRPK1 SRPK1 HNRNPA2B1-2 HNRNPA2B1-2 JMJD6 JMJD6 ENSOCUP00000038234 ENSOCUP00000038234 SLC39A5 SLC39A5 RBM11 RBM11 MBNL3 MBNL3 MBNL1 MBNL1 LEO1 LEO1 FXR2 FXR2 ENSOCUP00000041756 ENSOCUP00000041756 FXR1 FXR1 DDX5 DDX5 DHX36 DHX36 RBFOX2 RBFOX2 NUP98 NUP98 FAM172A FAM172A HNRNPU HNRNPU RBM42 RBM42 ENSOCUP00000047305 ENSOCUP00000047305 ENSOCUP00000047334 ENSOCUP00000047334 PRR3 PRR3 SRSF4 SRSF4 WTAP WTAP RNPS1 RNPS1 NSRP1 NSRP1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RBM24RNA binding motif protein 24. (192 aa)
KHDRBS3KH RNA binding domain containing, signal transduction associated 3. (361 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1726 aa)
SRSF12Serine and arginine rich splicing factor 12. (166 aa)
RBFOX1RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (369 aa)
CELF1CUGBP Elav-like family member 1. (512 aa)
G1SFQ9_RABITRRM domain-containing protein. (499 aa)
ACIN1Apoptotic chromatin condensation inducer 1. (1336 aa)
RESTRE1 silencing transcription factor. (930 aa)
RBM23RNA binding motif protein 23. (444 aa)
SFSWAPSplicing factor SWAP. (968 aa)
RBM3RNA binding motif protein 3. (156 aa)
RBM15RNA binding motif protein 15. (969 aa)
SLTMSAFB like transcription modulator. (990 aa)
RBM7RRM domain-containing protein. (267 aa)
CELF3Uncharacterized protein. (457 aa)
SONSON DNA binding protein. (2404 aa)
QKIQKI, KH domain containing RNA binding. (345 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
RBM4RNA-binding protein 4; RNA-binding factor involved in multiple aspects of cellular processes like alternative splicing of pre-mRNA and translation regulation. Modulates alternative 5'-splice site and exon selection. Acts as a muscle cell differentiation-promoting factor. Activates exon skipping of the PTB pre-mRNA during muscle cell differentiation. Antagonizes the activity of the splicing factor PTBP1 to modulate muscle cell-specific exon selection of alpha tropomyosin. Binds to intronic pyrimidine-rich sequence of the TPM1 and MAPT pre-mRNAs. Required for the translational activation [...] (365 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (827 aa)
CELF2CUGBP Elav-like family member 2. (532 aa)
DDX17DEAD-box helicase 17; Belongs to the DEAD box helicase family. (716 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
SRPK2SRSF protein kinase 2. (739 aa)
LARP7La ribonucleoprotein domain family member 7. (579 aa)
LOC100358894Uncharacterized protein. (391 aa)
KHDRBS1KH RNA binding domain containing, signal transduction associated 1. (443 aa)
SNW1SNW domain containing 1. (536 aa)
AHCYL1Adenosylhomocysteinase like 1; Belongs to the adenosylhomocysteinase family. (530 aa)
SRSF6Serine/arginine-rich-splicing factor 6. (215 aa)
TIA1TIA1 cytotoxic granule associated RNA binding protein. (386 aa)
RBM5RNA binding motif protein 5. (815 aa)
KHDRBS2KH RNA binding domain containing, signal transduction associated 2. (349 aa)
SAP18Uncharacterized protein. (210 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (733 aa)
RBM25RNA binding motif protein 25. (843 aa)
NCBP1Nuclear cap binding protein subunit 1. (799 aa)
RBFOX3RRM domain-containing protein. (315 aa)
FMR1Fragile X mental retardation 1. (632 aa)
SNRNP70Small nuclear ribonucleoprotein U1 subunit 70. (561 aa)
ZC3H14Zinc finger CCCH-type containing 14. (708 aa)
PRPF19Pre-mRNA processing factor 19. (504 aa)
YTHDC1YTH domain containing 1. (655 aa)
CDC73Cell division cycle 73. (728 aa)
VIRMAVir like m6A methyltransferase associated. (1811 aa)
RBM20RNA binding motif protein 20. (1204 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
ZC3H10Zinc finger CCCH-type containing 10. (436 aa)
NOVA1NOVA alternative splicing regulator 1. (507 aa)
G1TFE3_RABITUncharacterized protein. (430 aa)
RBM39RNA binding motif protein 39 isoform a (Predicted). (530 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (470 aa)
LOC100347836RRM domain-containing protein. (361 aa)
CPEB3Cytoplasmic polyadenylation element binding protein 3. (713 aa)
RBMXL2RBM1CTR domain-containing protein. (212 aa)
G1TL38_RABITRRM domain-containing protein. (85 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (265 aa)
G1TQQ3_RABITCleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (220 aa)
RAVER1Ribonucleoprotein, PTB binding 1. (744 aa)
METTL16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (562 aa)
G1TSJ3_RABITUncharacterized protein. (176 aa)
RAVER2Ribonucleoprotein, PTB binding 2. (758 aa)
NOVA2NOVA alternative splicing regulator 2. (571 aa)
G1TTW4_RABITUncharacterized protein. (439 aa)
NCLNucleolin. (721 aa)
G1TWF5_RABITRRM domain-containing protein. (89 aa)
HNRNPA2B1Heterogeneous nuclear ribonucleoprotein A2/B1. (352 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
TRA2ATransformer 2 alpha homolog. (282 aa)
RBM10RNA binding motif protein 10. (996 aa)
G1U223_RABITUncharacterized protein. (219 aa)
PCBP4Poly(rC) binding protein 4. (403 aa)
SRRM4Serine/arginine repetitive matrix 4. (601 aa)
HNRNPLHeterogeneous nuclear ribonucleoprotein L; Belongs to the enoyl-CoA hydratase/isomerase family. (763 aa)
MYOD1Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (323 aa)
SRSF9Serine and arginine rich splicing factor 9. (221 aa)
SF1CCHC-type domain-containing protein. (630 aa)
RBM15BSPOC domain-containing protein. (314 aa)
SRSF10Serine and arginine rich splicing factor 10. (262 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (604 aa)
CPEB1RRM domain-containing protein. (653 aa)
THRAP3Thyroid hormone receptor associated protein 3. (959 aa)
ENSOCUP00000029090Uncharacterized protein. (134 aa)
TRA2BTransformer 2 beta homolog. (340 aa)
DHX9DExH-box helicase 9. (1298 aa)
SRSF7CCHC-type domain-containing protein. (270 aa)
ENSOCUP00000031127Uncharacterized protein. (310 aa)
CELF4CUGBP Elav-like family member 4. (565 aa)
ENSOCUP00000031966Uncharacterized protein. (89 aa)
HSF1Heat shock transcription factor 1. (680 aa)
PAF1PAF1 homolog, Paf1/RNA polymerase II complex component. (780 aa)
DYRK1ADual-specificity tyrosine-phosphorylation-regulated kinase 1A. (829 aa)
SAFBScaffold attachment factor B. (816 aa)
ENSOCUP00000033566Tudor_FRX1 domain-containing protein. (52 aa)
MBNL2Muscleblind like splicing regulator 2. (391 aa)
SRPK1SRSF protein kinase 1. (829 aa)
HNRNPA2B1-2Heterogeneous nuclear ribonucleoprotein A2/B1. (340 aa)
JMJD6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (410 aa)
ENSOCUP00000038234Uncharacterized protein. (105 aa)
SLC39A5Solute carrier family 39 member 5. (549 aa)
RBM11Uncharacterized protein. (258 aa)
MBNL3Muscleblind like splicing regulator 3. (393 aa)
MBNL1Muscleblind like splicing regulator 1. (434 aa)
LEO1LEO1 homolog, Paf1/RNA polymerase II complex component. (701 aa)
FXR2FMR1 autosomal homolog 2. (649 aa)
ENSOCUP00000041756RRM domain-containing protein. (147 aa)
FXR1FMR1 autosomal homolog 1. (781 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (614 aa)
DHX36DEAH-box helicase 36. (1468 aa)
RBFOX2RNA binding fox-1 homolog 2. (592 aa)
NUP98Nucleoporin 98. (1825 aa)
FAM172AFamily with sequence similarity 172 member A. (552 aa)
HNRNPUHeterogeneous nuclear ribonucleoprotein U. (844 aa)
RBM42RNA binding motif protein 42. (475 aa)
ENSOCUP00000047305Uncharacterized protein. (144 aa)
ENSOCUP00000047334Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
PRR3Proline rich 3. (186 aa)
SRSF4Serine and arginine rich splicing factor 4. (507 aa)
WTAPWT1 associated protein. (448 aa)
RNPS1RRM domain-containing protein. (305 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (571 aa)
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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