(7 nodes) CRD-mediated mRNA stability complex network (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IGF2BP1	Insulin like growth factor 2 mRNA binding protein 1. (570 aa)
	SYNCRIP	Uncharacterized protein. (623 aa)
	DHX9	DExH-box helicase 9. (1298 aa)
	CSDE1	Cold shock domain containing E1. (851 aa)
	ENSOCUP00000034123	Uncharacterized protein. (421 aa)
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (844 aa)
	ENSOCUP00000040691	Uncharacterized protein. (65 aa)

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX9	HNRNPU	ENSOCUP00000029909	ENSOCUP00000044849	DExH-box helicase 9.	Heterogeneous nuclear ribonucleoprotein U.	0.968
DHX9	IGF2BP1	ENSOCUP00000029909	ENSOCUP00000003814	DExH-box helicase 9.	Insulin like growth factor 2 mRNA binding protein 1.	0.479
DHX9	SYNCRIP	ENSOCUP00000029909	ENSOCUP00000017167	DExH-box helicase 9.	Uncharacterized protein.	0.900
ENSOCUP00000034123	HNRNPU	ENSOCUP00000034123	ENSOCUP00000044849	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.610
ENSOCUP00000040691	HNRNPU	ENSOCUP00000040691	ENSOCUP00000044849	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.610
HNRNPU	DHX9	ENSOCUP00000044849	ENSOCUP00000029909	Heterogeneous nuclear ribonucleoprotein U.	DExH-box helicase 9.	0.968
HNRNPU	ENSOCUP00000034123	ENSOCUP00000044849	ENSOCUP00000034123	Heterogeneous nuclear ribonucleoprotein U.	Uncharacterized protein.	0.610
HNRNPU	ENSOCUP00000040691	ENSOCUP00000044849	ENSOCUP00000040691	Heterogeneous nuclear ribonucleoprotein U.	Uncharacterized protein.	0.610
HNRNPU	IGF2BP1	ENSOCUP00000044849	ENSOCUP00000003814	Heterogeneous nuclear ribonucleoprotein U.	Insulin like growth factor 2 mRNA binding protein 1.	0.562
HNRNPU	SYNCRIP	ENSOCUP00000044849	ENSOCUP00000017167	Heterogeneous nuclear ribonucleoprotein U.	Uncharacterized protein.	0.928
IGF2BP1	DHX9	ENSOCUP00000003814	ENSOCUP00000029909	Insulin like growth factor 2 mRNA binding protein 1.	DExH-box helicase 9.	0.479
IGF2BP1	HNRNPU	ENSOCUP00000003814	ENSOCUP00000044849	Insulin like growth factor 2 mRNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein U.	0.562
IGF2BP1	SYNCRIP	ENSOCUP00000003814	ENSOCUP00000017167	Insulin like growth factor 2 mRNA binding protein 1.	Uncharacterized protein.	0.674
SYNCRIP	DHX9	ENSOCUP00000017167	ENSOCUP00000029909	Uncharacterized protein.	DExH-box helicase 9.	0.900
SYNCRIP	HNRNPU	ENSOCUP00000017167	ENSOCUP00000044849	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.928
SYNCRIP	IGF2BP1	ENSOCUP00000017167	ENSOCUP00000003814	Uncharacterized protein.	Insulin like growth factor 2 mRNA binding protein 1.	0.674