STRINGSTRING
PRPF8 PRPF8 PRPF38A PRPF38A SNRPB2 SNRPB2 PRPF31 PRPF31 DHX16 DHX16 SF3B3 SF3B3 ZMAT2 ZMAT2 WBP4 WBP4 SF3B4 SF3B4 BUD13 BUD13 SNRPD3 SNRPD3 PRPF4 PRPF4 SF3A3 SF3A3 SF3B5 SF3B5 SNRNP200 SNRNP200 SF3B2 SF3B2 MFAP1 MFAP1 SNRPF SNRPF LOC100345430 LOC100345430 SNRPG SNRPG PRPF3 PRPF3 RBMX2 RBMX2 G1T572_RABIT G1T572_RABIT SNRPB SNRPB LSM6 LSM6 G1TGF3_RABIT G1TGF3_RABIT SNRPD2 SNRPD2 LSM8 LSM8 SART1 SART1 RNF113A RNF113A G1TPR7_RABIT G1TPR7_RABIT SNRPD1 SNRPD1 SNIP1 SNIP1 SF3B1 SF3B1 ENSOCUP00000021369 ENSOCUP00000021369 SNU13 SNU13 G1U7T7_RABIT G1U7T7_RABIT LSM5 LSM5 ENSOCUP00000027407 ENSOCUP00000027407 SMU1 SMU1 SF3A1 SF3A1 PRPF6 PRPF6 ENSOCUP00000028949 ENSOCUP00000028949 ENSOCUP00000029857 ENSOCUP00000029857 CWC27 CWC27 SNRPD2-2 SNRPD2-2 ENSOCUP00000033150 ENSOCUP00000033150 SNRPD2-3 SNRPD2-3 TXNL4A TXNL4A ENSOCUP00000040011 ENSOCUP00000040011 ENSOCUP00000040270 ENSOCUP00000040270 LSM2 LSM2 ENSOCUP00000042353 ENSOCUP00000042353 PHF5A PHF5A EFTUD2 EFTUD2 SNRPA1 SNRPA1 ENSOCUP00000046384 ENSOCUP00000046384 SF3B1-2 SF3B1-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF8Pre-mRNA processing factor 8. (2335 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (225 aa)
PRPF31Pre-mRNA processing factor 31. (462 aa)
DHX16DEAH-box helicase 16. (1044 aa)
SF3B3Splicing factor 3b subunit 3. (1189 aa)
ZMAT2Zinc finger matrin-type 2. (199 aa)
WBP4WW domain binding protein 4. (370 aa)
SF3B4Splicing factor 3b subunit 4. (424 aa)
BUD13BUD13 homolog. (700 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PRPF4Pre-mRNA processing factor 4. (522 aa)
SF3A3Splicing factor 3a subunit 3. (501 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2135 aa)
SF3B2Splicing factor 3b subunit 2. (869 aa)
MFAP1Microfibrillar-associated protein 1 (Predicted). (439 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
LOC100345430U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SNRPGSmall nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (76 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
RBMX2RNA binding motif protein X-linked 2. (329 aa)
G1T572_RABITRibosomal_L7Ae domain-containing protein. (73 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
G1TGF3_RABITSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
SART1Uncharacterized protein. (160 aa)
RNF113ARing finger protein 113A. (344 aa)
G1TPR7_RABITSmall nuclear ribonucleoprotein-associated protein. (240 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
SNIP1Smad nuclear interacting protein 1. (397 aa)
SF3B1SF3b1 domain-containing protein. (1120 aa)
ENSOCUP00000021369annotation not available (102 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
G1U7T7_RABITSmall nuclear ribonucleoprotein-associated protein. (218 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
ENSOCUP00000027407Sm domain-containing protein. (65 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (604 aa)
SF3A1Splicing factor 3a subunit 1. (917 aa)
PRPF6Pre-mRNA processing factor 6. (1038 aa)
ENSOCUP00000028949Ribosomal_L7Ae domain-containing protein. (73 aa)
ENSOCUP00000029857LRRcap domain-containing protein. (245 aa)
CWC27CWC27 spliceosome associated cyclophilin. (524 aa)
SNRPD2-2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (112 aa)
ENSOCUP00000033150Uncharacterized protein. (70 aa)
SNRPD2-3Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (69 aa)
TXNL4AThioredoxin like 4A. (97 aa)
ENSOCUP00000040011Uncharacterized protein. (155 aa)
ENSOCUP00000040270Uncharacterized protein. (120 aa)
LSM2Sm domain-containing protein. (215 aa)
ENSOCUP00000042353Uncharacterized protein. (59 aa)
PHF5APHD finger protein 5A. (173 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (1021 aa)
SNRPA1LRRcap domain-containing protein. (340 aa)
ENSOCUP00000046384Sm domain-containing protein. (123 aa)
SF3B1-2Uncharacterized protein. (154 aa)
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.