(30 nodes) SNARE interactions in vesicular transport network (Oryctolagus cuniculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNAP29	t-SNARE coiled-coil homology domain-containing protein. (305 aa)
	BNIP1	BCL2 interacting protein 1. (228 aa)
	VAMP7	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	GOSR1	Golgi SNAP receptor complex member 1. (253 aa)
	VAMP8	Vesicle associated membrane protein 8. (100 aa)
	YKT6	Uncharacterized protein. (385 aa)
	STX17	Syntaxin 17; Belongs to the syntaxin family. (303 aa)
	STX6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (341 aa)
	VAMP2	V-SNARE coiled-coil homology domain-containing protein. (226 aa)
	SNAP23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (211 aa)
	STX1A	Syntaxin 1A; Belongs to the syntaxin family. (315 aa)
	VAMP4	Vesicle associated membrane protein 4. (141 aa)
	STX11	Syntaxin 11; Belongs to the syntaxin family. (286 aa)
	G1TT40_RABIT	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (350 aa)
	SEC22B	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (219 aa)
	VAMP1	Vesicle associated membrane protein 1. (118 aa)
	STX19	Syntaxin 19; Belongs to the syntaxin family. (294 aa)
	VAMP5	Vesicle associated membrane protein 5. (116 aa)
	STX7	Syntaxin 7; Belongs to the syntaxin family. (282 aa)
	VTI1A	Vesicle transport through interaction with t-SNAREs 1A. (269 aa)
	VTI1B	Vesicle transport through interaction with t-SNAREs 1B. (242 aa)
	GOSR2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	VAMP3	Vesicle associated membrane protein 3. (128 aa)
	STX18	Syntaxin 18. (358 aa)
	STX16-NPEPL1	STX16-NPEPL1 readthrough (NMD candidate); Belongs to the syntaxin family. (361 aa)
	STX3-2	SynN domain-containing protein. (271 aa)
	STX8	t-SNARE coiled-coil homology domain-containing protein. (125 aa)
	STX4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (298 aa)
	STX2	Syntaxin 2; Belongs to the syntaxin family. (296 aa)
	BET1	Bet1 golgi vesicular membrane trafficking protein. (120 aa)

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1	BNIP1	ENSOCUP00000047270	ENSOCUP00000000037	Bet1 golgi vesicular membrane trafficking protein.	BCL2 interacting protein 1.	0.456
BET1	GOSR1	ENSOCUP00000047270	ENSOCUP00000001528	Bet1 golgi vesicular membrane trafficking protein.	Golgi SNAP receptor complex member 1.	0.985
BET1	GOSR2	ENSOCUP00000047270	ENSOCUP00000033253	Bet1 golgi vesicular membrane trafficking protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.998
BET1	SEC22B	ENSOCUP00000047270	ENSOCUP00000049216	Bet1 golgi vesicular membrane trafficking protein.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.998
BET1	SNAP23	ENSOCUP00000047270	ENSOCUP00000009456	Bet1 golgi vesicular membrane trafficking protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.497
BET1	SNAP29	ENSOCUP00000047270	ENSOCUP00000047648	Bet1 golgi vesicular membrane trafficking protein.	t-SNARE coiled-coil homology domain-containing protein.	0.556
BET1	STX11	ENSOCUP00000047270	ENSOCUP00000017502	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 11; Belongs to the syntaxin family.	0.491
BET1	STX16-NPEPL1	ENSOCUP00000047270	ENSOCUP00000035376	Bet1 golgi vesicular membrane trafficking protein.	STX16-NPEPL1 readthrough (NMD candidate); Belongs to the syntaxin family.	0.697
BET1	STX17	ENSOCUP00000047270	ENSOCUP00000003646	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 17; Belongs to the syntaxin family.	0.835
BET1	STX18	ENSOCUP00000047270	ENSOCUP00000034682	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 18.	0.689
BET1	STX19	ENSOCUP00000047270	ENSOCUP00000025250	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 19; Belongs to the syntaxin family.	0.601
BET1	STX1A	ENSOCUP00000047270	ENSOCUP00000014867	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 1A; Belongs to the syntaxin family.	0.585
BET1	STX3-2	ENSOCUP00000047270	ENSOCUP00000035874	Bet1 golgi vesicular membrane trafficking protein.	SynN domain-containing protein.	0.428
BET1	STX4	ENSOCUP00000047270	ENSOCUP00000041354	Bet1 golgi vesicular membrane trafficking protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.495
BET1	STX6	ENSOCUP00000047270	ENSOCUP00000004074	Bet1 golgi vesicular membrane trafficking protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.653
BET1	STX7	ENSOCUP00000047270	ENSOCUP00000028173	Bet1 golgi vesicular membrane trafficking protein.	Syntaxin 7; Belongs to the syntaxin family.	0.863
BET1	STX8	ENSOCUP00000047270	ENSOCUP00000039740	Bet1 golgi vesicular membrane trafficking protein.	t-SNARE coiled-coil homology domain-containing protein.	0.534
BET1	VAMP1	ENSOCUP00000047270	ENSOCUP00000020511	Bet1 golgi vesicular membrane trafficking protein.	Vesicle associated membrane protein 1.	0.566
BET1	VAMP2	ENSOCUP00000047270	ENSOCUP00000008737	Bet1 golgi vesicular membrane trafficking protein.	V-SNARE coiled-coil homology domain-containing protein.	0.578
BET1	VAMP3	ENSOCUP00000047270	ENSOCUP00000034375	Bet1 golgi vesicular membrane trafficking protein.	Vesicle associated membrane protein 3.	0.583