(15 nodes) Cytosolic small ribosomal subunit, and Formation of the ternary complex, and subsequently, the 43S complex network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3BY52_TETNG	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	RPS20	Ribosomal protein S20. (119 aa)
	H3C4B5_TETNG	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (150 aa)
	H3C9J8_TETNG	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	Q4T9W7_TETNG	Chromosome undetermined SCAF7485, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	Q4SDJ7_TETNG	Chromosome 18 SCAF14637, whole genome shotgun sequence. (249 aa)
	H3CZE7_TETNG	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	RPS29	Chromosome 14 SCAF14660, whole genome shotgun sequence. (56 aa)
	Q4SBM8_TETNG	Chromosome 15 SCAF14667, whole genome shotgun sequence. (69 aa)
	H3D293_TETNG	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (162 aa)
	H3DAS9_TETNG	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	Q4RIE5_TETNG	Chromosome 11 SCAF15043, whole genome shotgun sequence. (166 aa)
	H3DQ82_TETNG	Ribosomal protein S21. (53 aa)
	H3DR47_TETNG	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (125 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BY52_TETNG	H3C4B5_TETNG	ENSTNIP00000000917	ENSTNIP00000003084	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
H3BY52_TETNG	H3C9J8_TETNG	ENSTNIP00000000917	ENSTNIP00000004920	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
H3BY52_TETNG	H3CZE7_TETNG	ENSTNIP00000000917	ENSTNIP00000013632	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
H3BY52_TETNG	H3D293_TETNG	ENSTNIP00000000917	ENSTNIP00000014631	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
H3BY52_TETNG	H3DAS9_TETNG	ENSTNIP00000000917	ENSTNIP00000017621	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
H3BY52_TETNG	H3DQ82_TETNG	ENSTNIP00000000917	ENSTNIP00000022681	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein S21.	0.999
H3BY52_TETNG	H3DR47_TETNG	ENSTNIP00000000917	ENSTNIP00000022996	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
H3BY52_TETNG	Q4RIE5_TETNG	ENSTNIP00000000917	ENSTNIP00000021477	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Chromosome 11 SCAF15043, whole genome shotgun sequence.	0.999
H3BY52_TETNG	Q4SBM8_TETNG	ENSTNIP00000000917	ENSTNIP00000013997	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Chromosome 15 SCAF14667, whole genome shotgun sequence.	0.999
H3BY52_TETNG	Q4SDJ7_TETNG	ENSTNIP00000000917	ENSTNIP00000013485	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Chromosome 18 SCAF14637, whole genome shotgun sequence.	0.999
H3BY52_TETNG	Q4T9W7_TETNG	ENSTNIP00000000917	ENSTNIP00000005673	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Chromosome undetermined SCAF7485, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS15 family.	0.999
H3BY52_TETNG	RPS20	ENSTNIP00000000917	ENSTNIP00000001041	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal protein S20.	0.999
H3BY52_TETNG	RPS29	ENSTNIP00000000917	ENSTNIP00000013907	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Chromosome 14 SCAF14660, whole genome shotgun sequence.	0.999
H3BY52_TETNG	rps3a	ENSTNIP00000000917	ENSTNIP00000005962	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
H3C4B5_TETNG	H3BY52_TETNG	ENSTNIP00000003084	ENSTNIP00000000917	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
H3C4B5_TETNG	H3C9J8_TETNG	ENSTNIP00000003084	ENSTNIP00000004920	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
H3C4B5_TETNG	H3CZE7_TETNG	ENSTNIP00000003084	ENSTNIP00000013632	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
H3C4B5_TETNG	H3D293_TETNG	ENSTNIP00000003084	ENSTNIP00000014631	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
H3C4B5_TETNG	H3DAS9_TETNG	ENSTNIP00000003084	ENSTNIP00000017621	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
H3C4B5_TETNG	H3DQ82_TETNG	ENSTNIP00000003084	ENSTNIP00000022681	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	Ribosomal protein S21.	0.999