(18 nodes) Mixed, incl. EF-hand, and Nitric-oxide synthase binding network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3C739_TETNG	Uncharacterized protein. (543 aa)
	H3C7H8_TETNG	ZZ-type domain-containing protein. (230 aa)
	H3CBU6_TETNG	Catenin (cadherin-associated protein), alpha-like 1. (542 aa)
	H3CH81_TETNG	Plasminogen receptor, C-terminal lysine transmembrane protein. (149 aa)
	H3CNA4_TETNG	Nitric oxide synthase 1 (neuronal) adaptor protein b. (498 aa)
	H3CPX2_TETNG	Si:dkey-34e4.1. (352 aa)
	H3CS29_TETNG	PID domain-containing protein. (458 aa)
	H3CS30_TETNG	Uncharacterized protein. (72 aa)
	H3CSV9_TETNG	Syntrophin, gamma 1. (518 aa)
	H3CTW1_TETNG	Syntrophin, beta 2. (526 aa)
	H3CW73_TETNG	Syntrophin, basic 1. (547 aa)
	H3D3Y8_TETNG	Utrophin; May play a role in anchoring the cytoskeleton to the plasma membrane. (3158 aa)
	PLEKHG1	Pleckstrin homology and RhoGEF domain containing G1. (1367 aa)
	H3D4C6_TETNG	Cell division cycle associated 4. (280 aa)
	H3D6Y7_TETNG	Dystrophin. (637 aa)
	H3DHH3_TETNG	Dystrophin related protein 2. (886 aa)
	H3DP81_TETNG	Dystrobrevin, beta a. (605 aa)
	H3DPP2_TETNG	Dystrobrevin. (615 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C739_TETNG	H3CBU6_TETNG	ENSTNIP00000004060	ENSTNIP00000005718	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha-like 1.	0.578
H3C739_TETNG	H3CNA4_TETNG	ENSTNIP00000004060	ENSTNIP00000009735	Uncharacterized protein.	Nitric oxide synthase 1 (neuronal) adaptor protein b.	0.545
H3C739_TETNG	H3CPX2_TETNG	ENSTNIP00000004060	ENSTNIP00000010306	Uncharacterized protein.	Si:dkey-34e4.1.	0.545
H3C739_TETNG	H3CS29_TETNG	ENSTNIP00000004060	ENSTNIP00000011063	Uncharacterized protein.	PID domain-containing protein.	0.545
H3C739_TETNG	H3CS30_TETNG	ENSTNIP00000004060	ENSTNIP00000011064	Uncharacterized protein.	Uncharacterized protein.	0.545
H3C739_TETNG	H3CSV9_TETNG	ENSTNIP00000004060	ENSTNIP00000011343	Uncharacterized protein.	Syntrophin, gamma 1.	0.433
H3C739_TETNG	H3CTW1_TETNG	ENSTNIP00000004060	ENSTNIP00000011695	Uncharacterized protein.	Syntrophin, beta 2.	0.435
H3C739_TETNG	H3CW73_TETNG	ENSTNIP00000004060	ENSTNIP00000012507	Uncharacterized protein.	Syntrophin, basic 1.	0.430
H3C739_TETNG	H3D6Y7_TETNG	ENSTNIP00000004060	ENSTNIP00000016278	Uncharacterized protein.	Dystrophin.	0.844
H3C739_TETNG	H3DHH3_TETNG	ENSTNIP00000004060	ENSTNIP00000019967	Uncharacterized protein.	Dystrophin related protein 2.	0.462
H3C7H8_TETNG	H3CBU6_TETNG	ENSTNIP00000004200	ENSTNIP00000005718	ZZ-type domain-containing protein.	Catenin (cadherin-associated protein), alpha-like 1.	0.418
H3C7H8_TETNG	H3CSV9_TETNG	ENSTNIP00000004200	ENSTNIP00000011343	ZZ-type domain-containing protein.	Syntrophin, gamma 1.	0.421
H3C7H8_TETNG	H3CTW1_TETNG	ENSTNIP00000004200	ENSTNIP00000011695	ZZ-type domain-containing protein.	Syntrophin, beta 2.	0.480
H3C7H8_TETNG	H3CW73_TETNG	ENSTNIP00000004200	ENSTNIP00000012507	ZZ-type domain-containing protein.	Syntrophin, basic 1.	0.480
H3CBU6_TETNG	H3C739_TETNG	ENSTNIP00000005718	ENSTNIP00000004060	Catenin (cadherin-associated protein), alpha-like 1.	Uncharacterized protein.	0.578
H3CBU6_TETNG	H3C7H8_TETNG	ENSTNIP00000005718	ENSTNIP00000004200	Catenin (cadherin-associated protein), alpha-like 1.	ZZ-type domain-containing protein.	0.418
H3CBU6_TETNG	H3CTW1_TETNG	ENSTNIP00000005718	ENSTNIP00000011695	Catenin (cadherin-associated protein), alpha-like 1.	Syntrophin, beta 2.	0.421
H3CBU6_TETNG	H3CW73_TETNG	ENSTNIP00000005718	ENSTNIP00000012507	Catenin (cadherin-associated protein), alpha-like 1.	Syntrophin, basic 1.	0.421
H3CBU6_TETNG	H3D3Y8_TETNG	ENSTNIP00000005718	ENSTNIP00000015226	Catenin (cadherin-associated protein), alpha-like 1.	Utrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.578
H3CBU6_TETNG	H3D6Y7_TETNG	ENSTNIP00000005718	ENSTNIP00000016278	Catenin (cadherin-associated protein), alpha-like 1.	Dystrophin.	0.578