(22 nodes) Organellar large ribosomal subunit network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3BY77_TETNG	Mitochondrial ribosomal protein L10. (261 aa)
	H3C285_TETNG	Mitochondrial ribosomal protein L43. (159 aa)
	Q4T9G5_TETNG	Chromosome undetermined SCAF7571, whole genome shotgun sequence. (135 aa)
	MRPL49	Mitochondrial ribosomal protein L49. (169 aa)
	Q4T5B1_TETNG	Chromosome undetermined SCAF9337, whole genome shotgun sequence. (103 aa)
	H3CLC4_TETNG	Mitochondrial ribosomal protein L45. (244 aa)
	H3CPN9_TETNG	Mitochondrial ribosomal protein L48. (205 aa)
	H3CQD2_TETNG	Uncharacterized protein. (280 aa)
	Q4SNE2_TETNG	Chromosome 8 SCAF14543, whole genome shotgun sequence. (131 aa)
	H3CYN7_TETNG	Mitochondrial ribosomal protein L23. (93 aa)
	Q4SBN9_TETNG	Chromosome 15 SCAF14667, whole genome shotgun sequence. (118 aa)
	H3D2Y1_TETNG	Mitochondrial ribosomal protein L46. (278 aa)
	H3D8K2_TETNG	Mitochondrial ribosomal protein L52. (133 aa)
	H3D8N6_TETNG	Mitochondrial ribosomal protein L30. (157 aa)
	Q4RZB3_TETNG	Chromosome 1 SCAF14944, whole genome shotgun sequence. (187 aa)
	H3DAL8_TETNG	Mitochondrial ribosomal protein L39. (322 aa)
	Q4RUH3_TETNG	Chromosome 1 SCAF14995, whole genome shotgun sequence. (138 aa)
	H3DDM4_TETNG	Mitochondrial ribosomal protein L47. (223 aa)
	Q4RTW8_TETNG	Chromosome 12 SCAF14996, whole genome shotgun sequence. (187 aa)
	H3DGT8_TETNG	Mitochondrial ribosomal protein L14. (148 aa)
	Q4RM21_TETNG	Chromosome 10 SCAF15019, whole genome shotgun sequence. (176 aa)
	MRPL42	Mitochondrial ribosomal protein L42. (131 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BY77_TETNG	H3C285_TETNG	ENSTNIP00000000942	ENSTNIP00000002353	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L43.	0.933
H3BY77_TETNG	H3CLC4_TETNG	ENSTNIP00000000942	ENSTNIP00000009053	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L45.	0.930
H3BY77_TETNG	H3CPN9_TETNG	ENSTNIP00000000942	ENSTNIP00000010222	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L48.	0.894
H3BY77_TETNG	H3CQD2_TETNG	ENSTNIP00000000942	ENSTNIP00000010466	Mitochondrial ribosomal protein L10.	Uncharacterized protein.	0.874
H3BY77_TETNG	H3CYN7_TETNG	ENSTNIP00000000942	ENSTNIP00000013372	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L23.	0.942
H3BY77_TETNG	H3D2Y1_TETNG	ENSTNIP00000000942	ENSTNIP00000014869	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L46.	0.954
H3BY77_TETNG	H3D8K2_TETNG	ENSTNIP00000000942	ENSTNIP00000016843	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L52.	0.879
H3BY77_TETNG	H3D8N6_TETNG	ENSTNIP00000000942	ENSTNIP00000016877	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L30.	0.935
H3BY77_TETNG	H3DAL8_TETNG	ENSTNIP00000000942	ENSTNIP00000017559	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L39.	0.913
H3BY77_TETNG	H3DDM4_TETNG	ENSTNIP00000000942	ENSTNIP00000018617	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L47.	0.925
H3BY77_TETNG	H3DGT8_TETNG	ENSTNIP00000000942	ENSTNIP00000019732	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L14.	0.883
H3BY77_TETNG	MRPL42	ENSTNIP00000000942	ENSTNIP00000021652	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L42.	0.891
H3BY77_TETNG	MRPL49	ENSTNIP00000000942	ENSTNIP00000005867	Mitochondrial ribosomal protein L10.	Mitochondrial ribosomal protein L49.	0.973
H3BY77_TETNG	Q4RM21_TETNG	ENSTNIP00000000942	ENSTNIP00000020496	Mitochondrial ribosomal protein L10.	Chromosome 10 SCAF15019, whole genome shotgun sequence.	0.934
H3BY77_TETNG	Q4RTW8_TETNG	ENSTNIP00000000942	ENSTNIP00000018690	Mitochondrial ribosomal protein L10.	Chromosome 12 SCAF14996, whole genome shotgun sequence.	0.963
H3BY77_TETNG	Q4RUH3_TETNG	ENSTNIP00000000942	ENSTNIP00000018538	Mitochondrial ribosomal protein L10.	Chromosome 1 SCAF14995, whole genome shotgun sequence.	0.966
H3BY77_TETNG	Q4RZB3_TETNG	ENSTNIP00000000942	ENSTNIP00000017230	Mitochondrial ribosomal protein L10.	Chromosome 1 SCAF14944, whole genome shotgun sequence.	0.897
H3BY77_TETNG	Q4SBN9_TETNG	ENSTNIP00000000942	ENSTNIP00000013988	Mitochondrial ribosomal protein L10.	Chromosome 15 SCAF14667, whole genome shotgun sequence.	0.938
H3BY77_TETNG	Q4SNE2_TETNG	ENSTNIP00000000942	ENSTNIP00000010860	Mitochondrial ribosomal protein L10.	Chromosome 8 SCAF14543, whole genome shotgun sequence.	0.938
H3BY77_TETNG	Q4T5B1_TETNG	ENSTNIP00000000942	ENSTNIP00000006775	Mitochondrial ribosomal protein L10.	Chromosome undetermined SCAF9337, whole genome shotgun sequence.	0.966