(39 nodes) RNA recognition motif network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3BZ85_TETNG	Serine and arginine rich splicing factor 9. (238 aa)
	H3C1F2_TETNG	Heterogeneous nuclear ribonucleoprotein L. (528 aa)
	H3C228_TETNG	Transformer 2 beta homolog. (280 aa)
	H3C243_TETNG	Serine and arginine rich splicing factor 6a. (328 aa)
	H3C295_TETNG	RRM domain-containing protein. (166 aa)
	H3C2H6_TETNG	RRM domain-containing protein. (331 aa)
	H3C410_TETNG	Uncharacterized protein. (391 aa)
	H3C4T6_TETNG	Zinc finger protein 207, b. (456 aa)
	H3C5Q4_TETNG	RRM domain-containing protein. (261 aa)
	H3C6P7_TETNG	Serine and arginine rich splicing factor 2a. (225 aa)
	H3C8B7_TETNG	RRM domain-containing protein. (226 aa)
	H3C8R3_TETNG	Heterogeneous nuclear ribonucleoprotein Ub. (757 aa)
	H3CAS9_TETNG	Polypyrimidine tract binding protein 3. (536 aa)
	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L like. (496 aa)
	H3CEJ4_TETNG	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (489 aa)
	H3CPM1_TETNG	Uncharacterized protein. (261 aa)
	H3CPQ0_TETNG	RRM domain-containing protein. (307 aa)
	H3CQ29_TETNG	Heterogeneous nuclear ribonucleoprotein K, like. (445 aa)
	H3CRP7_TETNG	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
	Q4SMD2_TETNG	Chromosome 3 SCAF14553, whole genome shotgun sequence. (227 aa)
	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H1. (259 aa)
	H3CXA3_TETNG	Uncharacterized protein. (236 aa)
	H3CYR8_TETNG	Serine and arginine rich splicing factor 11. (440 aa)
	H3D156_TETNG	FUS RNA binding protein. (518 aa)
	Q4S0J2_TETNG	Chromosome 2 SCAF14781, whole genome shotgun sequence. (231 aa)
	H3D9V2_TETNG	Serine and arginine rich splicing factor 7a. (242 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (165 aa)
	H3DBA3_TETNG	TAR DNA binding protein. (399 aa)
	H3DC55_TETNG	Heterogeneous nuclear ribonucleoprotein A1b. (343 aa)
	H3DCI6_TETNG	TAR DNA binding protein, like. (375 aa)
	H3DDK8_TETNG	Heterogeneous nuclear ribonucleoprotein M. (670 aa)
	H3DEJ6_TETNG	EWS RNA-binding protein 1b. (630 aa)
	H3DFM2_TETNG	Serine and arginine rich splicing factor 1a. (247 aa)
	H3DG64_TETNG	Serine and arginine rich splicing factor 5b. (277 aa)
	H3DHG3_TETNG	RNA binding motif protein X-linked. (383 aa)
	H3DHT6_TETNG	Heterogeneous nuclear ribonucleoprotein A3. (352 aa)
	TRA2B	Transformer 2 beta homolog. (282 aa)
	PTBP2	Polypyrimidine tract binding protein 2a. (520 aa)
	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U like 1. (590 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BZ85_TETNG	H3C1F2_TETNG	ENSTNIP00000001301	ENSTNIP00000002068	Serine and arginine rich splicing factor 9.	Heterogeneous nuclear ribonucleoprotein L.	0.570
H3BZ85_TETNG	H3C228_TETNG	ENSTNIP00000001301	ENSTNIP00000002296	Serine and arginine rich splicing factor 9.	Transformer 2 beta homolog.	0.770
H3BZ85_TETNG	H3C243_TETNG	ENSTNIP00000001301	ENSTNIP00000002311	Serine and arginine rich splicing factor 9.	Serine and arginine rich splicing factor 6a.	0.687
H3BZ85_TETNG	H3C295_TETNG	ENSTNIP00000001301	ENSTNIP00000002363	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.813
H3BZ85_TETNG	H3C2H6_TETNG	ENSTNIP00000001301	ENSTNIP00000002444	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.510
H3BZ85_TETNG	H3C410_TETNG	ENSTNIP00000001301	ENSTNIP00000002979	Serine and arginine rich splicing factor 9.	Uncharacterized protein.	0.687
H3BZ85_TETNG	H3C5Q4_TETNG	ENSTNIP00000001301	ENSTNIP00000003574	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.575
H3BZ85_TETNG	H3C6P7_TETNG	ENSTNIP00000001301	ENSTNIP00000003918	Serine and arginine rich splicing factor 9.	Serine and arginine rich splicing factor 2a.	0.961
H3BZ85_TETNG	H3C8B7_TETNG	ENSTNIP00000001301	ENSTNIP00000004489	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.483
H3BZ85_TETNG	H3C8R3_TETNG	ENSTNIP00000001301	ENSTNIP00000004635	Serine and arginine rich splicing factor 9.	Heterogeneous nuclear ribonucleoprotein Ub.	0.572
H3BZ85_TETNG	H3CAS9_TETNG	ENSTNIP00000001301	ENSTNIP00000005351	Serine and arginine rich splicing factor 9.	Polypyrimidine tract binding protein 3.	0.483
H3BZ85_TETNG	H3CEJ4_TETNG	ENSTNIP00000001301	ENSTNIP00000006668	Serine and arginine rich splicing factor 9.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.438
H3BZ85_TETNG	H3CPM1_TETNG	ENSTNIP00000001301	ENSTNIP00000010204	Serine and arginine rich splicing factor 9.	Uncharacterized protein.	0.483
H3BZ85_TETNG	H3CPQ0_TETNG	ENSTNIP00000001301	ENSTNIP00000010233	Serine and arginine rich splicing factor 9.	RRM domain-containing protein.	0.575
H3BZ85_TETNG	H3CQ29_TETNG	ENSTNIP00000001301	ENSTNIP00000010363	Serine and arginine rich splicing factor 9.	Heterogeneous nuclear ribonucleoprotein K, like.	0.639
H3BZ85_TETNG	H3CRP7_TETNG	ENSTNIP00000001301	ENSTNIP00000010931	Serine and arginine rich splicing factor 9.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.791
H3BZ85_TETNG	H3CXA3_TETNG	ENSTNIP00000001301	ENSTNIP00000012888	Serine and arginine rich splicing factor 9.	Uncharacterized protein.	0.829
H3BZ85_TETNG	H3CYR8_TETNG	ENSTNIP00000001301	ENSTNIP00000013403	Serine and arginine rich splicing factor 9.	Serine and arginine rich splicing factor 11.	0.690
H3BZ85_TETNG	H3D156_TETNG	ENSTNIP00000001301	ENSTNIP00000014242	Serine and arginine rich splicing factor 9.	FUS RNA binding protein.	0.438
H3BZ85_TETNG	H3D9V2_TETNG	ENSTNIP00000001301	ENSTNIP00000017293	Serine and arginine rich splicing factor 9.	Serine and arginine rich splicing factor 7a.	0.963