(7 nodes) 26S proteasome regulatory subunit P45-like, and Rpn11/EIF3F, C-terminal network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3C4L6_TETNG	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (448 aa)
	Q4SRB7_TETNG	Proteasome subunit alpha type. (241 aa)
	H3CVR6_TETNG	Proteasome 26S subunit, non-ATPase 14. (309 aa)
	Q4SBC3_TETNG	Chromosome 11 SCAF14674, whole genome shotgun sequence. (389 aa)
	H3D3I6_TETNG	Proteasome 26S subunit, non-ATPase 7. (327 aa)
	H3DJY6_TETNG	Proteasome 26S subunit, ATPase 3. (446 aa)
	H3DNK8_TETNG	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (414 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C4L6_TETNG	H3CVR6_TETNG	ENSTNIP00000003185	ENSTNIP00000012350	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 14.	0.999
H3C4L6_TETNG	H3D3I6_TETNG	ENSTNIP00000003185	ENSTNIP00000015074	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 7.	0.999
H3C4L6_TETNG	H3DJY6_TETNG	ENSTNIP00000003185	ENSTNIP00000020832	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Proteasome 26S subunit, ATPase 3.	0.999
H3C4L6_TETNG	H3DNK8_TETNG	ENSTNIP00000003185	ENSTNIP00000022107	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.999
H3C4L6_TETNG	Q4SBC3_TETNG	ENSTNIP00000003185	ENSTNIP00000014074	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Chromosome 11 SCAF14674, whole genome shotgun sequence.	0.999
H3C4L6_TETNG	Q4SRB7_TETNG	ENSTNIP00000003185	ENSTNIP00000010079	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	Proteasome subunit alpha type.	0.999
H3CVR6_TETNG	H3C4L6_TETNG	ENSTNIP00000012350	ENSTNIP00000003185	Proteasome 26S subunit, non-ATPase 14.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.999
H3CVR6_TETNG	H3D3I6_TETNG	ENSTNIP00000012350	ENSTNIP00000015074	Proteasome 26S subunit, non-ATPase 14.	Proteasome 26S subunit, non-ATPase 7.	0.999
H3CVR6_TETNG	H3DJY6_TETNG	ENSTNIP00000012350	ENSTNIP00000020832	Proteasome 26S subunit, non-ATPase 14.	Proteasome 26S subunit, ATPase 3.	0.999
H3CVR6_TETNG	H3DNK8_TETNG	ENSTNIP00000012350	ENSTNIP00000022107	Proteasome 26S subunit, non-ATPase 14.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.999
H3CVR6_TETNG	Q4SBC3_TETNG	ENSTNIP00000012350	ENSTNIP00000014074	Proteasome 26S subunit, non-ATPase 14.	Chromosome 11 SCAF14674, whole genome shotgun sequence.	0.999
H3CVR6_TETNG	Q4SRB7_TETNG	ENSTNIP00000012350	ENSTNIP00000010079	Proteasome 26S subunit, non-ATPase 14.	Proteasome subunit alpha type.	0.999
H3D3I6_TETNG	H3C4L6_TETNG	ENSTNIP00000015074	ENSTNIP00000003185	Proteasome 26S subunit, non-ATPase 7.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.999
H3D3I6_TETNG	H3CVR6_TETNG	ENSTNIP00000015074	ENSTNIP00000012350	Proteasome 26S subunit, non-ATPase 7.	Proteasome 26S subunit, non-ATPase 14.	0.999
H3D3I6_TETNG	H3DJY6_TETNG	ENSTNIP00000015074	ENSTNIP00000020832	Proteasome 26S subunit, non-ATPase 7.	Proteasome 26S subunit, ATPase 3.	0.999
H3D3I6_TETNG	H3DNK8_TETNG	ENSTNIP00000015074	ENSTNIP00000022107	Proteasome 26S subunit, non-ATPase 7.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.999
H3D3I6_TETNG	Q4SBC3_TETNG	ENSTNIP00000015074	ENSTNIP00000014074	Proteasome 26S subunit, non-ATPase 7.	Chromosome 11 SCAF14674, whole genome shotgun sequence.	0.999
H3D3I6_TETNG	Q4SRB7_TETNG	ENSTNIP00000015074	ENSTNIP00000010079	Proteasome 26S subunit, non-ATPase 7.	Proteasome subunit alpha type.	0.999
H3DJY6_TETNG	H3C4L6_TETNG	ENSTNIP00000020832	ENSTNIP00000003185	Proteasome 26S subunit, ATPase 3.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.999
H3DJY6_TETNG	H3CVR6_TETNG	ENSTNIP00000020832	ENSTNIP00000012350	Proteasome 26S subunit, ATPase 3.	Proteasome 26S subunit, non-ATPase 14.	0.999