(57 nodes) Neural retina development network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3DA76_TETNG	LIM homeobox 1a. (411 aa)
	H3CZ19_TETNG	Crumbs cell polarity complex component 2b. (1461 aa)
	H3CYJ5_TETNG	Sidekick cell adhesion molecule 2a. (2210 aa)
	H3CXT8_TETNG	Crumbs cell polarity complex component 1. (1271 aa)
	H3CX61_TETNG	FAT atypical cadherin 3b. (4272 aa)
	H3CWP9_TETNG	Thyroid hormone receptor beta. (386 aa)
	H3CW16_TETNG	Bardet-Biedl syndrome 4. (527 aa)
	H3CQU2_TETNG	Uncharacterized protein. (710 aa)
	H3CQ66_TETNG	Nuclear respiratory factor 1. (488 aa)
	H3CP84_TETNG	Guanine nucleotide binding protein-like 3 (nucleolar). (549 aa)
	H3CNI8_TETNG	Uncharacterized protein. (175 aa)
	H3CN49_TETNG	Growth differentiation factor 6a. (432 aa)
	H3CMV4_TETNG	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 2. (958 aa)
	H3CMV3_TETNG	Uncharacterized protein. (392 aa)
	H3CME4_TETNG	Usher syndrome 1C. (865 aa)
	H3CKW4_TETNG	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family. (122 aa)
	Q4SWF6_TETNG	Chromosome undetermined SCAF13626, whole genome shotgun sequence. (121 aa)
	TBX2	T-box transcription factor 2. (686 aa)
	H3D9U8_TETNG	Ubiquitin carboxyl-terminal hydrolase. (663 aa)
	GPM6A	Glycoprotein M6Ab. (277 aa)
	H3D765_TETNG	Abhydrolase domain containing 12. (331 aa)
	H3D6D4_TETNG	Atonal bHLH transcription factor 7. (140 aa)
	H3D6A3_TETNG	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (155 aa)
	H3D666_TETNG	Glycoprotein M6Aa. (278 aa)
	H3D5N2_TETNG	Mediator complex subunit 24. (983 aa)
	H3CJ62_TETNG	FAT atypical cadherin 3a. (4430 aa)
	H3CIN0_TETNG	Reticulon 4 interacting protein 1. (354 aa)
	H3DBI5_TETNG	Mindbomb E3 ubiquitin protein ligase 1. (1008 aa)
	H3DD02_TETNG	Cactin. (740 aa)
	H3DDI3_TETNG	Retinal homeobox gene 1. (351 aa)
	H3DEN6_TETNG	Forkhead box N4. (517 aa)
	H3DGN5_TETNG	Uncharacterized protein. (1205 aa)
	H3DIC1_TETNG	Uncharacterized protein. (276 aa)
	H3DKJ2_TETNG	Basic helix-loop-helix family, member e23. (219 aa)
	H3DMR4_TETNG	RP1 axonemal microtubule associated. (216 aa)
	H3DPP8_TETNG	Abelson helper integration site 1. (777 aa)
	H3DQA1_TETNG	Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 1. (497 aa)
	H3D4V2_TETNG	Uncharacterized protein. (689 aa)
	H3D1D6_TETNG	Four-jointed box kinase 1. (428 aa)
	H3DAC9_TETNG	Sidekick cell adhesion molecule 2b. (2129 aa)
	Q4T1S4_TETNG	Chromosome undetermined SCAF10491, whole genome shotgun sequence. (52 aa)
	H3CH68_TETNG	TatD DNase domain containing 1. (127 aa)
	H3CFY6_TETNG	Uncharacterized protein. (212 aa)
	H3CCN3_TETNG	Uncharacterized protein. (460 aa)
	Q4TAQ9_TETNG	Chromosome undetermined SCAF7267, whole genome shotgun sequence. (311 aa)
	H3C8V4_TETNG	LAM_G_DOMAIN domain-containing protein. (226 aa)
	H3C8H6_TETNG	Uncharacterized protein. (202 aa)
	H3C6X0_TETNG	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family. (169 aa)
	H3C6L8_TETNG	Ig-like domain-containing protein. (493 aa)
	H3C5Y7_TETNG	THB domain-containing protein. (260 aa)
	H3C471_TETNG	Uncharacterized protein. (411 aa)
	H3C3R2_TETNG	Uncharacterized protein. (280 aa)
	H3C0W8_TETNG	POC1 centriolar protein B. (495 aa)
	H3BYT2_TETNG	Nuclear receptor domain-containing protein. (71 aa)
	H3DB20_TETNG	RAR-related orphan receptor B. (471 aa)
	H3CZ86_TETNG	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (356 aa)
	H3CZ74_TETNG	Basigin. (391 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C471_TETNG	H3DGN5_TETNG	ENSTNIP00000003040	ENSTNIP00000019679	Uncharacterized protein.	Uncharacterized protein.	0.582
H3C5Y7_TETNG	H3D4V2_TETNG	ENSTNIP00000003657	ENSTNIP00000015541	THB domain-containing protein.	Uncharacterized protein.	0.748
H3C6L8_TETNG	H3CMV3_TETNG	ENSTNIP00000003889	ENSTNIP00000009584	Ig-like domain-containing protein.	Uncharacterized protein.	0.792
H3C6L8_TETNG	H3D4V2_TETNG	ENSTNIP00000003889	ENSTNIP00000015541	Ig-like domain-containing protein.	Uncharacterized protein.	0.773
H3C6X0_TETNG	H3CKW4_TETNG	ENSTNIP00000003991	ENSTNIP00000008893	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family.	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family.	0.899
H3C8V4_TETNG	H3CJ62_TETNG	ENSTNIP00000004676	ENSTNIP00000008291	LAM_G_DOMAIN domain-containing protein.	FAT atypical cadherin 3a.	0.484
H3C8V4_TETNG	H3CX61_TETNG	ENSTNIP00000004676	ENSTNIP00000012846	LAM_G_DOMAIN domain-containing protein.	FAT atypical cadherin 3b.	0.483
H3C8V4_TETNG	H3D1D6_TETNG	ENSTNIP00000004676	ENSTNIP00000014322	LAM_G_DOMAIN domain-containing protein.	Four-jointed box kinase 1.	0.664
H3CJ62_TETNG	H3C8V4_TETNG	ENSTNIP00000008291	ENSTNIP00000004676	FAT atypical cadherin 3a.	LAM_G_DOMAIN domain-containing protein.	0.484
H3CJ62_TETNG	H3CX61_TETNG	ENSTNIP00000008291	ENSTNIP00000012846	FAT atypical cadherin 3a.	FAT atypical cadherin 3b.	0.493
H3CJ62_TETNG	H3D1D6_TETNG	ENSTNIP00000008291	ENSTNIP00000014322	FAT atypical cadherin 3a.	Four-jointed box kinase 1.	0.664
H3CKW4_TETNG	H3C6X0_TETNG	ENSTNIP00000008893	ENSTNIP00000003991	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family.	Tetraspanin 12; Belongs to the tetraspanin (TM4SF) family.	0.899
H3CMV3_TETNG	H3C6L8_TETNG	ENSTNIP00000009584	ENSTNIP00000003889	Uncharacterized protein.	Ig-like domain-containing protein.	0.792
H3CX61_TETNG	H3C8V4_TETNG	ENSTNIP00000012846	ENSTNIP00000004676	FAT atypical cadherin 3b.	LAM_G_DOMAIN domain-containing protein.	0.483
H3CX61_TETNG	H3CJ62_TETNG	ENSTNIP00000012846	ENSTNIP00000008291	FAT atypical cadherin 3b.	FAT atypical cadherin 3a.	0.493
H3CX61_TETNG	H3D1D6_TETNG	ENSTNIP00000012846	ENSTNIP00000014322	FAT atypical cadherin 3b.	Four-jointed box kinase 1.	0.664
H3D1D6_TETNG	H3C8V4_TETNG	ENSTNIP00000014322	ENSTNIP00000004676	Four-jointed box kinase 1.	LAM_G_DOMAIN domain-containing protein.	0.664
H3D1D6_TETNG	H3CJ62_TETNG	ENSTNIP00000014322	ENSTNIP00000008291	Four-jointed box kinase 1.	FAT atypical cadherin 3a.	0.664
H3D1D6_TETNG	H3CX61_TETNG	ENSTNIP00000014322	ENSTNIP00000012846	Four-jointed box kinase 1.	FAT atypical cadherin 3b.	0.664
H3D4V2_TETNG	H3C5Y7_TETNG	ENSTNIP00000015541	ENSTNIP00000003657	Uncharacterized protein.	THB domain-containing protein.	0.748