(19 nodes) Protein polyglutamylation network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q4S6P9_TETNG	Chromosome undetermined SCAF14724, whole genome shotgun sequence. (309 aa)
	H3C8Y9_TETNG	Uncharacterized protein. (200 aa)
	H3CJU6_TETNG	Tubulin tyrosine ligase-like family, member 5. (1162 aa)
	H3CNA2_TETNG	Uncharacterized protein. (433 aa)
	H3CXK3_TETNG	Tubulin tyrosine ligase-like family, member 6. (413 aa)
	Q4SD68_TETNG	Chromosome 11 SCAF14642, whole genome shotgun sequence. (300 aa)
	H3D143_TETNG	Fleer. (647 aa)
	H3D1H9_TETNG	Tubulin tyrosine ligase-like family, member 1. (424 aa)
	H3D3P7_TETNG	Tubulin tyrosine ligase-like family, member 7. (894 aa)
	H3D458_TETNG	Uncharacterized protein. (267 aa)
	H3D470_TETNG	DUF667 domain-containing protein. (193 aa)
	Q4S6N2_TETNG	Chromosome undetermined SCAF14724, whole genome shotgun sequence. (117 aa)
	H3D7F7_TETNG	Tubulin tyrosine ligase-like family, member 11. (665 aa)
	LRRC58	Leucine rich repeat containing 58b. (355 aa)
	H3DCJ9_TETNG	Tubulin tyrosine ligase-like family, member 9. (436 aa)
	H3DDX9_TETNG	Tubulin tyrosine ligase-like family, member 4. (442 aa)
	H3DF48_TETNG	Centrosomal protein 41. (342 aa)
	H3DII6_TETNG	Uncharacterized protein. (314 aa)
	H3DJJ2_TETNG	Cilia and flagella associated protein 20. (194 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CJU6_TETNG	H3CXK3_TETNG	ENSTNIP00000008525	ENSTNIP00000012988	Tubulin tyrosine ligase-like family, member 5.	Tubulin tyrosine ligase-like family, member 6.	0.493
H3CJU6_TETNG	H3D1H9_TETNG	ENSTNIP00000008525	ENSTNIP00000014366	Tubulin tyrosine ligase-like family, member 5.	Tubulin tyrosine ligase-like family, member 1.	0.546
H3CJU6_TETNG	H3D3P7_TETNG	ENSTNIP00000008525	ENSTNIP00000015135	Tubulin tyrosine ligase-like family, member 5.	Tubulin tyrosine ligase-like family, member 7.	0.544
H3CJU6_TETNG	H3D7F7_TETNG	ENSTNIP00000008525	ENSTNIP00000016448	Tubulin tyrosine ligase-like family, member 5.	Tubulin tyrosine ligase-like family, member 11.	0.576
H3CJU6_TETNG	H3DDX9_TETNG	ENSTNIP00000008525	ENSTNIP00000018722	Tubulin tyrosine ligase-like family, member 5.	Tubulin tyrosine ligase-like family, member 4.	0.572
H3CJU6_TETNG	H3DII6_TETNG	ENSTNIP00000008525	ENSTNIP00000020330	Tubulin tyrosine ligase-like family, member 5.	Uncharacterized protein.	0.469
H3CJU6_TETNG	Q4SD68_TETNG	ENSTNIP00000008525	ENSTNIP00000013593	Tubulin tyrosine ligase-like family, member 5.	Chromosome 11 SCAF14642, whole genome shotgun sequence.	0.418
H3CXK3_TETNG	H3CJU6_TETNG	ENSTNIP00000012988	ENSTNIP00000008525	Tubulin tyrosine ligase-like family, member 6.	Tubulin tyrosine ligase-like family, member 5.	0.493
H3CXK3_TETNG	H3D143_TETNG	ENSTNIP00000012988	ENSTNIP00000014229	Tubulin tyrosine ligase-like family, member 6.	Fleer.	0.471
H3CXK3_TETNG	H3DF48_TETNG	ENSTNIP00000012988	ENSTNIP00000019142	Tubulin tyrosine ligase-like family, member 6.	Centrosomal protein 41.	0.579
H3D143_TETNG	H3CXK3_TETNG	ENSTNIP00000014229	ENSTNIP00000012988	Fleer.	Tubulin tyrosine ligase-like family, member 6.	0.471
H3D1H9_TETNG	H3CJU6_TETNG	ENSTNIP00000014366	ENSTNIP00000008525	Tubulin tyrosine ligase-like family, member 1.	Tubulin tyrosine ligase-like family, member 5.	0.546
H3D1H9_TETNG	H3D7F7_TETNG	ENSTNIP00000014366	ENSTNIP00000016448	Tubulin tyrosine ligase-like family, member 1.	Tubulin tyrosine ligase-like family, member 11.	0.544
H3D1H9_TETNG	H3DDX9_TETNG	ENSTNIP00000014366	ENSTNIP00000018722	Tubulin tyrosine ligase-like family, member 1.	Tubulin tyrosine ligase-like family, member 4.	0.422
H3D1H9_TETNG	H3DF48_TETNG	ENSTNIP00000014366	ENSTNIP00000019142	Tubulin tyrosine ligase-like family, member 1.	Centrosomal protein 41.	0.547
H3D1H9_TETNG	H3DII6_TETNG	ENSTNIP00000014366	ENSTNIP00000020330	Tubulin tyrosine ligase-like family, member 1.	Uncharacterized protein.	0.791
H3D1H9_TETNG	Q4SD68_TETNG	ENSTNIP00000014366	ENSTNIP00000013593	Tubulin tyrosine ligase-like family, member 1.	Chromosome 11 SCAF14642, whole genome shotgun sequence.	0.821
H3D3P7_TETNG	H3CJU6_TETNG	ENSTNIP00000015135	ENSTNIP00000008525	Tubulin tyrosine ligase-like family, member 7.	Tubulin tyrosine ligase-like family, member 5.	0.544
H3D7F7_TETNG	H3CJU6_TETNG	ENSTNIP00000016448	ENSTNIP00000008525	Tubulin tyrosine ligase-like family, member 11.	Tubulin tyrosine ligase-like family, member 5.	0.576
H3D7F7_TETNG	H3D1H9_TETNG	ENSTNIP00000016448	ENSTNIP00000014366	Tubulin tyrosine ligase-like family, member 11.	Tubulin tyrosine ligase-like family, member 1.	0.544