(31 nodes) Nucleus localization network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3CJJ7_TETNG	FAT domain-containing protein. (65 aa)
	H3CIA7_TETNG	SUN domain-containing protein. (185 aa)
	H3DKT7_TETNG	Sad1 and UNC84 domain containing 1. (927 aa)
	ENSTNIP00000022847	Unnamed protein product. (66 aa)
	H3DQH7_TETNG	FAT domain-containing protein. (76 aa)
	H3DPQ3_TETNG	KASH domain-containing protein. (2814 aa)
	H3DPQ2_TETNG	Uncharacterized protein. (1340 aa)
	H3DNC0_TETNG	SUN domain-containing protein. (349 aa)
	H3CFU2_TETNG	Uncharacterized protein; Belongs to the intermediate filament family. (609 aa)
	H3CFR1_TETNG	Centrosomal protein 120. (990 aa)
	H3CD45_TETNG	SUN domain-containing protein. (189 aa)
	H3CCL4_TETNG	Uncharacterized protein; Belongs to the intermediate filament family. (564 aa)
	H3CBL3_TETNG	KASH domain-containing protein. (1107 aa)
	H3C8G3_TETNG	Dynactin 1b. (1114 aa)
	H3C6V7_TETNG	Uncharacterized protein. (171 aa)
	LMNA	Lamin A/C; Belongs to the intermediate filament family. (605 aa)
	H3CBS3_TETNG	Lamin B1; Belongs to the intermediate filament family. (586 aa)
	H3DCH6_TETNG	Transmembrane protein 201. (665 aa)
	H3DBR2_TETNG	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (598 aa)
	H3D4B1_TETNG	Uncharacterized protein. (6839 aa)
	H3D3Z4_TETNG	Spectrin repeat containing, nuclear envelope 1a. (8686 aa)
	H3CWG1_TETNG	Uncharacterized protein. (245 aa)
	H3CUB0_TETNG	Family with sequence similarity 193 member B. (820 aa)
	H3CS89_TETNG	Uncharacterized protein. (227 aa)
	H3CNV9_TETNG	Lamin B2; Belongs to the intermediate filament family. (580 aa)
	H3CNU9_TETNG	Pericentriolar material 1. (2070 aa)
	H3CNN0_TETNG	Dynactin 2 (p50). (403 aa)
	H3CNJ1_TETNG	CAP-Gly domain-containing protein. (1281 aa)
	LRMP	Lymphoid restricted membrane protein. (344 aa)
	H3CK92_TETNG	Uncharacterized protein. (333 aa)
	H3CJJ9_TETNG	Serine/threonine-protein kinase TOR. (1019 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTNIP00000022847	H3CD45_TETNG	ENSTNIP00000022847	ENSTNIP00000006168	Unnamed protein product.	SUN domain-containing protein.	0.481
ENSTNIP00000022847	H3CFU2_TETNG	ENSTNIP00000022847	ENSTNIP00000007119	Unnamed protein product.	Uncharacterized protein; Belongs to the intermediate filament family.	0.922
ENSTNIP00000022847	H3DKT7_TETNG	ENSTNIP00000022847	ENSTNIP00000021135	Unnamed protein product.	Sad1 and UNC84 domain containing 1.	0.481
H3C6V7_TETNG	H3C8G3_TETNG	ENSTNIP00000003978	ENSTNIP00000004535	Uncharacterized protein.	Dynactin 1b.	0.631
H3C6V7_TETNG	H3CNN0_TETNG	ENSTNIP00000003978	ENSTNIP00000009862	Uncharacterized protein.	Dynactin 2 (p50).	0.948
H3C8G3_TETNG	H3C6V7_TETNG	ENSTNIP00000004535	ENSTNIP00000003978	Dynactin 1b.	Uncharacterized protein.	0.631
H3C8G3_TETNG	H3CNN0_TETNG	ENSTNIP00000004535	ENSTNIP00000009862	Dynactin 1b.	Dynactin 2 (p50).	0.948
H3CBL3_TETNG	H3CD45_TETNG	ENSTNIP00000005635	ENSTNIP00000006168	KASH domain-containing protein.	SUN domain-containing protein.	0.674
H3CBL3_TETNG	H3CIA7_TETNG	ENSTNIP00000005635	ENSTNIP00000007985	KASH domain-containing protein.	SUN domain-containing protein.	0.674
H3CBL3_TETNG	H3CS89_TETNG	ENSTNIP00000005635	ENSTNIP00000011123	KASH domain-containing protein.	Uncharacterized protein.	0.822
H3CBL3_TETNG	H3CWG1_TETNG	ENSTNIP00000005635	ENSTNIP00000012595	KASH domain-containing protein.	Uncharacterized protein.	0.834
H3CBL3_TETNG	H3DKT7_TETNG	ENSTNIP00000005635	ENSTNIP00000021135	KASH domain-containing protein.	Sad1 and UNC84 domain containing 1.	0.674
H3CBL3_TETNG	H3DNC0_TETNG	ENSTNIP00000005635	ENSTNIP00000022019	KASH domain-containing protein.	SUN domain-containing protein.	0.674
H3CBS3_TETNG	H3CD45_TETNG	ENSTNIP00000005695	ENSTNIP00000006168	Lamin B1; Belongs to the intermediate filament family.	SUN domain-containing protein.	0.481
H3CBS3_TETNG	H3DKT7_TETNG	ENSTNIP00000005695	ENSTNIP00000021135	Lamin B1; Belongs to the intermediate filament family.	Sad1 and UNC84 domain containing 1.	0.481
H3CCL4_TETNG	H3CD45_TETNG	ENSTNIP00000005987	ENSTNIP00000006168	Uncharacterized protein; Belongs to the intermediate filament family.	SUN domain-containing protein.	0.441
H3CCL4_TETNG	H3DKT7_TETNG	ENSTNIP00000005987	ENSTNIP00000021135	Uncharacterized protein; Belongs to the intermediate filament family.	Sad1 and UNC84 domain containing 1.	0.441
H3CD45_TETNG	ENSTNIP00000022847	ENSTNIP00000006168	ENSTNIP00000022847	SUN domain-containing protein.	Unnamed protein product.	0.481
H3CD45_TETNG	H3CBL3_TETNG	ENSTNIP00000006168	ENSTNIP00000005635	SUN domain-containing protein.	KASH domain-containing protein.	0.674
H3CD45_TETNG	H3CBS3_TETNG	ENSTNIP00000006168	ENSTNIP00000005695	SUN domain-containing protein.	Lamin B1; Belongs to the intermediate filament family.	0.481