10 items (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3DER6_TETNG	Ubiquitin recognition factor in ER associated degradation 1. (309 aa)
	H3DD70_TETNG	Valosin containing protein; Belongs to the AAA ATPase family. (804 aa)
	H3D8Z1_TETNG	UDP-glucose glycoprotein glucosyltransferase 2. (1531 aa)
	H3DP20_TETNG	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (249 aa)
	H3CKP4_TETNG	AUP1 lipid droplet regulating VLDL assembly factor. (414 aa)
	RNF5	Ring finger protein 5. (141 aa)
	Q4SJC5_TETNG	Chromosome 4 SCAF14575, whole genome shotgun sequence. (191 aa)
	H3C606_TETNG	Uncharacterized protein. (72 aa)
	H3C6T3_TETNG	UDP-glucose glycoprotein glucosyltransferase 1. (1330 aa)
	H3C9C7_TETNG	Uncharacterized protein. (486 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C6T3_TETNG	H3D8Z1_TETNG	ENSTNIP00000003954	ENSTNIP00000016982	UDP-glucose glycoprotein glucosyltransferase 1.	UDP-glucose glycoprotein glucosyltransferase 2.	0.902
H3CKP4_TETNG	H3DD70_TETNG	ENSTNIP00000008823	ENSTNIP00000018463	AUP1 lipid droplet regulating VLDL assembly factor.	Valosin containing protein; Belongs to the AAA ATPase family.	0.652
H3D8Z1_TETNG	H3C6T3_TETNG	ENSTNIP00000016982	ENSTNIP00000003954	UDP-glucose glycoprotein glucosyltransferase 2.	UDP-glucose glycoprotein glucosyltransferase 1.	0.902
H3DD70_TETNG	H3CKP4_TETNG	ENSTNIP00000018463	ENSTNIP00000008823	Valosin containing protein; Belongs to the AAA ATPase family.	AUP1 lipid droplet regulating VLDL assembly factor.	0.652
H3DD70_TETNG	H3DER6_TETNG	ENSTNIP00000018463	ENSTNIP00000019009	Valosin containing protein; Belongs to the AAA ATPase family.	Ubiquitin recognition factor in ER associated degradation 1.	0.991
H3DD70_TETNG	H3DP20_TETNG	ENSTNIP00000018463	ENSTNIP00000022269	Valosin containing protein; Belongs to the AAA ATPase family.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.988
H3DD70_TETNG	Q4SJC5_TETNG	ENSTNIP00000018463	ENSTNIP00000011936	Valosin containing protein; Belongs to the AAA ATPase family.	Chromosome 4 SCAF14575, whole genome shotgun sequence.	0.585
H3DD70_TETNG	RNF5	ENSTNIP00000018463	ENSTNIP00000006473	Valosin containing protein; Belongs to the AAA ATPase family.	Ring finger protein 5.	0.585
H3DER6_TETNG	H3DD70_TETNG	ENSTNIP00000019009	ENSTNIP00000018463	Ubiquitin recognition factor in ER associated degradation 1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.991
H3DER6_TETNG	H3DP20_TETNG	ENSTNIP00000019009	ENSTNIP00000022269	Ubiquitin recognition factor in ER associated degradation 1.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.968
H3DP20_TETNG	H3DD70_TETNG	ENSTNIP00000022269	ENSTNIP00000018463	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Valosin containing protein; Belongs to the AAA ATPase family.	0.988
H3DP20_TETNG	H3DER6_TETNG	ENSTNIP00000022269	ENSTNIP00000019009	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin recognition factor in ER associated degradation 1.	0.968
H3DP20_TETNG	Q4SJC5_TETNG	ENSTNIP00000022269	ENSTNIP00000011936	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Chromosome 4 SCAF14575, whole genome shotgun sequence.	0.764
H3DP20_TETNG	RNF5	ENSTNIP00000022269	ENSTNIP00000006473	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ring finger protein 5.	0.764
Q4SJC5_TETNG	H3DD70_TETNG	ENSTNIP00000011936	ENSTNIP00000018463	Chromosome 4 SCAF14575, whole genome shotgun sequence.	Valosin containing protein; Belongs to the AAA ATPase family.	0.585
Q4SJC5_TETNG	H3DP20_TETNG	ENSTNIP00000011936	ENSTNIP00000022269	Chromosome 4 SCAF14575, whole genome shotgun sequence.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.764
RNF5	H3DD70_TETNG	ENSTNIP00000006473	ENSTNIP00000018463	Ring finger protein 5.	Valosin containing protein; Belongs to the AAA ATPase family.	0.585
RNF5	H3DP20_TETNG	ENSTNIP00000006473	ENSTNIP00000022269	Ring finger protein 5.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.764