11 items (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3C9J2_TETNG	Uncharacterized protein. (59 aa)
	H3C0C3_TETNG	Uncharacterized protein. (84 aa)
	H3CH35_TETNG	Aminotran_1_2 domain-containing protein. (153 aa)
	Q4SYL4_TETNG	Chromosome 10 SCAF12030, whole genome shotgun sequence. (511 aa)
	H3CK68_TETNG	Uncharacterized protein. (115 aa)
	H3CQJ6_TETNG	Serine palmitoyltransferase, small subunit B. (76 aa)
	H3CWE5_TETNG	Serine palmitoyltransferase, long chain base subunit 2b. (511 aa)
	Q4S5V3_TETNG	Chromosome 9 SCAF14729, whole genome shotgun sequence. (153 aa)
	Q4RTJ2_TETNG	ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)
	H3DGV3_TETNG	Isthmin 1. (447 aa)
	H3DGV4_TETNG	Serine palmitoyltransferase, long chain base subunit 3. (509 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C0C3_TETNG	H3CH35_TETNG	ENSTNIP00000001689	ENSTNIP00000007563	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.777
H3C0C3_TETNG	H3CK68_TETNG	ENSTNIP00000001689	ENSTNIP00000008647	Uncharacterized protein.	Uncharacterized protein.	0.777
H3C0C3_TETNG	H3CQJ6_TETNG	ENSTNIP00000001689	ENSTNIP00000010530	Uncharacterized protein.	Serine palmitoyltransferase, small subunit B.	0.571
H3C0C3_TETNG	Q4RTJ2_TETNG	ENSTNIP00000001689	ENSTNIP00000018791	Uncharacterized protein.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.556
H3C0C3_TETNG	Q4S5V3_TETNG	ENSTNIP00000001689	ENSTNIP00000015505	Uncharacterized protein.	Chromosome 9 SCAF14729, whole genome shotgun sequence.	0.556
H3C9J2_TETNG	H3CH35_TETNG	ENSTNIP00000004914	ENSTNIP00000007563	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.777
H3C9J2_TETNG	H3CK68_TETNG	ENSTNIP00000004914	ENSTNIP00000008647	Uncharacterized protein.	Uncharacterized protein.	0.777
H3C9J2_TETNG	H3CQJ6_TETNG	ENSTNIP00000004914	ENSTNIP00000010530	Uncharacterized protein.	Serine palmitoyltransferase, small subunit B.	0.571
H3C9J2_TETNG	Q4RTJ2_TETNG	ENSTNIP00000004914	ENSTNIP00000018791	Uncharacterized protein.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.556
H3C9J2_TETNG	Q4S5V3_TETNG	ENSTNIP00000004914	ENSTNIP00000015505	Uncharacterized protein.	Chromosome 9 SCAF14729, whole genome shotgun sequence.	0.556
H3CH35_TETNG	H3C0C3_TETNG	ENSTNIP00000007563	ENSTNIP00000001689	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.777
H3CH35_TETNG	H3C9J2_TETNG	ENSTNIP00000007563	ENSTNIP00000004914	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.777
H3CH35_TETNG	H3CK68_TETNG	ENSTNIP00000007563	ENSTNIP00000008647	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.900
H3CH35_TETNG	H3CQJ6_TETNG	ENSTNIP00000007563	ENSTNIP00000010530	Aminotran_1_2 domain-containing protein.	Serine palmitoyltransferase, small subunit B.	0.807
H3CH35_TETNG	H3CWE5_TETNG	ENSTNIP00000007563	ENSTNIP00000012579	Aminotran_1_2 domain-containing protein.	Serine palmitoyltransferase, long chain base subunit 2b.	0.777
H3CH35_TETNG	H3DGV3_TETNG	ENSTNIP00000007563	ENSTNIP00000019747	Aminotran_1_2 domain-containing protein.	Isthmin 1.	0.777
H3CH35_TETNG	H3DGV4_TETNG	ENSTNIP00000007563	ENSTNIP00000019748	Aminotran_1_2 domain-containing protein.	Serine palmitoyltransferase, long chain base subunit 3.	0.777
H3CH35_TETNG	Q4RTJ2_TETNG	ENSTNIP00000007563	ENSTNIP00000018791	Aminotran_1_2 domain-containing protein.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.821
H3CH35_TETNG	Q4S5V3_TETNG	ENSTNIP00000007563	ENSTNIP00000015505	Aminotran_1_2 domain-containing protein.	Chromosome 9 SCAF14729, whole genome shotgun sequence.	0.821
H3CH35_TETNG	Q4SYL4_TETNG	ENSTNIP00000007563	ENSTNIP00000008343	Aminotran_1_2 domain-containing protein.	Chromosome 10 SCAF12030, whole genome shotgun sequence.	0.777