(41 nodes) Dendritic spine network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3DC60_TETNG	Nuclear receptor subfamily 1, group D, member 4a. (527 aa)
	H3DQ32_TETNG	Potassium voltage-gated channel, Shal-related subfamily, member 3; Belongs to the potassium channel family. (629 aa)
	Q4TIM5_TETNG	Chromosome undetermined SCAF1955, whole genome shotgun sequence. (147 aa)
	H3DF17_TETNG	DUF3399 domain-containing protein. (193 aa)
	H3C6C4_TETNG	Uncharacterized protein. (261 aa)
	H3C8L7_TETNG	KH domain-containing protein. (214 aa)
	H3CA44_TETNG	Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family. (625 aa)
	Q4T7V7_TETNG	Chromosome undetermined SCAF7971, whole genome shotgun sequence. (101 aa)
	H3CDR7_TETNG	Fragile X mental retardation, autosomal homolog 1. (681 aa)
	H3CHQ8_TETNG	Fragile X mental retardation, autosomal homolog 2. (559 aa)
	H3CID0_TETNG	BCR activator of RhoGEF and GTPase. (836 aa)
	H3CKW5_TETNG	Ion_trans domain-containing protein; Belongs to the potassium channel family. (176 aa)
	H3CMF2_TETNG	ABR activator of RhoGEF and GTPase. (851 aa)
	H3CMX7_TETNG	Uncharacterized protein. (156 aa)
	KCND3	Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family. (649 aa)
	H3DF60_TETNG	Cortactin binding protein 2. (1597 aa)
	Q4RSC8_TETNG	Potassium voltage-gated channel, Shal-related subfamily, member 2; Belongs to the potassium channel family. (371 aa)
	H3CQQ8_TETNG	Dedicator of cytokinesis 10; Belongs to the DOCK family. (2032 aa)
	Q4SJT6_TETNG	Chromosome 1 SCAF14573, whole genome shotgun sequence. (185 aa)
	H3CWZ6_TETNG	Uncharacterized protein. (618 aa)
	H3CXN4_TETNG	Fragile X mental retardation 1. (564 aa)
	H3CXS2_TETNG	Si:dkey-33c9.6. (772 aa)
	DRD5	Dopamine receptor D5; Belongs to the G-protein coupled receptor 1 family. (434 aa)
	H3DHR9_TETNG	Protein phosphatase 1 regulatory subunit 9A-like A. (1073 aa)
	H3DIH3_TETNG	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1616 aa)
	H3D1K3_TETNG	Si:dkey-91m11.5. (1255 aa)
	H3D5U5_TETNG	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, b. (1198 aa)
	H3D8X7_TETNG	Toll-like receptor 7. (1173 aa)
	H3D930_TETNG	PDZ domain-containing protein. (808 aa)
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (1756 aa)
	H3DAC0_TETNG	Protein phosphatase 1, regulatory subunit 9Bb. (794 aa)
	FRMPD4	FERM and PDZ domain containing 4. (1298 aa)
	H3DC10_TETNG	ATPase H+ transporting accessory protein 2. (350 aa)
	H3DKW8_TETNG	Glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a. (1214 aa)
	H3BX09_TETNG	CortBP2 domain-containing protein. (38 aa)
	H3BXJ4_TETNG	Uncharacterized protein. (189 aa)
	H3C024_TETNG	Uncharacterized protein. (475 aa)
	H3C163_TETNG	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (278 aa)
	H3C1T2_TETNG	BTB_2 domain-containing protein. (92 aa)
	H3C394_TETNG	Nitric oxide synthase; Produces nitric oxide (NO). (1423 aa)
	H3C5H4_TETNG	SLIT-ROBO Rho GTPase activating protein 2. (1101 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C8L7_TETNG	H3CDR7_TETNG	ENSTNIP00000004589	ENSTNIP00000006390	KH domain-containing protein.	Fragile X mental retardation, autosomal homolog 1.	0.496
H3C8L7_TETNG	H3CHQ8_TETNG	ENSTNIP00000004589	ENSTNIP00000007786	KH domain-containing protein.	Fragile X mental retardation, autosomal homolog 2.	0.505
H3C8L7_TETNG	H3CMX7_TETNG	ENSTNIP00000004589	ENSTNIP00000009608	KH domain-containing protein.	Uncharacterized protein.	0.680
H3CDR7_TETNG	H3C8L7_TETNG	ENSTNIP00000006390	ENSTNIP00000004589	Fragile X mental retardation, autosomal homolog 1.	KH domain-containing protein.	0.496
H3CDR7_TETNG	H3CXN4_TETNG	ENSTNIP00000006390	ENSTNIP00000013019	Fragile X mental retardation, autosomal homolog 1.	Fragile X mental retardation 1.	0.494
H3CHQ8_TETNG	H3C8L7_TETNG	ENSTNIP00000007786	ENSTNIP00000004589	Fragile X mental retardation, autosomal homolog 2.	KH domain-containing protein.	0.505
H3CHQ8_TETNG	H3CXN4_TETNG	ENSTNIP00000007786	ENSTNIP00000013019	Fragile X mental retardation, autosomal homolog 2.	Fragile X mental retardation 1.	0.495
H3CMX7_TETNG	H3C8L7_TETNG	ENSTNIP00000009608	ENSTNIP00000004589	Uncharacterized protein.	KH domain-containing protein.	0.680
H3CMX7_TETNG	H3CXN4_TETNG	ENSTNIP00000009608	ENSTNIP00000013019	Uncharacterized protein.	Fragile X mental retardation 1.	0.515
H3CXN4_TETNG	H3CDR7_TETNG	ENSTNIP00000013019	ENSTNIP00000006390	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 1.	0.494
H3CXN4_TETNG	H3CHQ8_TETNG	ENSTNIP00000013019	ENSTNIP00000007786	Fragile X mental retardation 1.	Fragile X mental retardation, autosomal homolog 2.	0.495
H3CXN4_TETNG	H3CMX7_TETNG	ENSTNIP00000013019	ENSTNIP00000009608	Fragile X mental retardation 1.	Uncharacterized protein.	0.515
Q4SJT6_TETNG	Q4TIM5_TETNG	ENSTNIP00000011817	ENSTNIP00000022869	Chromosome 1 SCAF14573, whole genome shotgun sequence.	Chromosome undetermined SCAF1955, whole genome shotgun sequence.	0.449
Q4TIM5_TETNG	Q4SJT6_TETNG	ENSTNIP00000022869	ENSTNIP00000011817	Chromosome undetermined SCAF1955, whole genome shotgun sequence.	Chromosome 1 SCAF14573, whole genome shotgun sequence.	0.449