(44 nodes) PAS domain superfamily network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3D435_TETNG	Uncharacterized protein. (737 aa)
	H3DP90_TETNG	Nuclear receptor coactivator 1. (1412 aa)
	H3DBT6_TETNG	Potassium voltage-gated channel, subfamily H (eag-related), member 6a. (1104 aa)
	H3DAJ2_TETNG	Potassium voltage-gated channel, subfamily H (eag-related), member 3. (883 aa)
	H3DHE3_TETNG	Neuronal PAS domain protein 4a. (758 aa)
	H3DIF8_TETNG	Aryl hydrocarbon receptor 2. (921 aa)
	H3DIY2_TETNG	Hypoxia inducible factor 1 subunit alpha. (803 aa)
	H3DIY3_TETNG	Hypoxia inducible factor 1 subunit alpha a. (745 aa)
	H3D3L8_TETNG	Aryl hydrocarbon receptor nuclear translocator-like 2. (552 aa)
	H3D2N8_TETNG	Neuronal PAS domain protein 2. (840 aa)
	H3CTL5_TETNG	Uncharacterized protein. (685 aa)
	H3CT42_TETNG	Uncharacterized protein. (385 aa)
	H3CRY5_TETNG	Nuclear receptor coactivator. (1476 aa)
	H3DGF6_TETNG	Potassium voltage-gated channel subfamily H member 7. (691 aa)
	H3CPS8_TETNG	Potassium voltage-gated channel, subfamily H (eag-related), member 1a. (963 aa)
	H3CP18_TETNG	Period circadian clock 1b. (1193 aa)
	H3CRK4_TETNG	Aryl hydrocarbon receptor nuclear translocator. (762 aa)
	H3D4A9_TETNG	Potassium voltage-gated channel, subfamily H (eag-related), member 5b. (1005 aa)
	PER2	Period circadian regulator 2. (1401 aa)
	H3CRB9_TETNG	Nuclear receptor coactivator. (1439 aa)
	H3CKD8_TETNG	Uncharacterized protein. (127 aa)
	H3DR19_TETNG	Uncharacterized protein. (320 aa)
	H3DRC2_TETNG	PAS domain-containing protein. (182 aa)
	H3DRE9_TETNG	Uncharacterized protein. (169 aa)
	H3CP94_TETNG	Period circadian clock 3. (1140 aa)
	H3CPC4_TETNG	Nuclear receptor coactivator 3. (1431 aa)
	H3DLA9_TETNG	Cyclic nucleotide-binding domain-containing protein. (833 aa)
	H3DDY4_TETNG	Uncharacterized protein. (886 aa)
	H3DG17_TETNG	Uncharacterized protein. (940 aa)
	H3D7I3_TETNG	Phosphodiesterase. (756 aa)
	H3BXJ8_TETNG	PAS domain-containing protein. (81 aa)
	H3C1R7_TETNG	Endothelial PAS domain protein 1b. (799 aa)
	H3C2T2_TETNG	Aryl hydrocarbon receptor nuclear translocator-like 1a. (625 aa)
	CLOCK	Clock circadian regulator a. (870 aa)
	H3CAZ8_TETNG	Uncharacterized protein. (450 aa)
	H3CEP4_TETNG	Clock circadian regulator b. (838 aa)
	H3CHK6_TETNG	Potassium voltage-gated channel, subfamily H (eag-related), member 1b. (908 aa)
	H3CID5_TETNG	PAS domain-containing protein. (308 aa)
	H3DDY3_TETNG	Aryl hydrocarbon receptor 1b. (959 aa)
	H3DCQ3_TETNG	Period circadian clock 2. (1202 aa)
	H3D4Y3_TETNG	Nuclear receptor coactivator. (1414 aa)
	H3D7D1_TETNG	Uncharacterized protein. (281 aa)
	H3CQP0_TETNG	Neuronal PAS domain protein 1. (474 aa)
	H3CMV6_TETNG	Hypoxia inducible factor 1 subunit alpha, like. (644 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLOCK	H3C1R7_TETNG	ENSTNIP00000003682	ENSTNIP00000002184	Clock circadian regulator a.	Endothelial PAS domain protein 1b.	0.433
CLOCK	H3C2T2_TETNG	ENSTNIP00000003682	ENSTNIP00000002550	Clock circadian regulator a.	Aryl hydrocarbon receptor nuclear translocator-like 1a.	0.793
CLOCK	H3CAZ8_TETNG	ENSTNIP00000003682	ENSTNIP00000005420	Clock circadian regulator a.	Uncharacterized protein.	0.793
CLOCK	H3CID5_TETNG	ENSTNIP00000003682	ENSTNIP00000008013	Clock circadian regulator a.	PAS domain-containing protein.	0.433
CLOCK	H3CMV6_TETNG	ENSTNIP00000003682	ENSTNIP00000009587	Clock circadian regulator a.	Hypoxia inducible factor 1 subunit alpha, like.	0.433
CLOCK	H3CP18_TETNG	ENSTNIP00000003682	ENSTNIP00000010001	Clock circadian regulator a.	Period circadian clock 1b.	0.654
CLOCK	H3CP94_TETNG	ENSTNIP00000003682	ENSTNIP00000010077	Clock circadian regulator a.	Period circadian clock 3.	0.654
CLOCK	H3CQP0_TETNG	ENSTNIP00000003682	ENSTNIP00000010574	Clock circadian regulator a.	Neuronal PAS domain protein 1.	0.452
CLOCK	H3CTL5_TETNG	ENSTNIP00000003682	ENSTNIP00000011599	Clock circadian regulator a.	Uncharacterized protein.	0.544
CLOCK	H3D3L8_TETNG	ENSTNIP00000003682	ENSTNIP00000015106	Clock circadian regulator a.	Aryl hydrocarbon receptor nuclear translocator-like 2.	0.793
CLOCK	H3D7D1_TETNG	ENSTNIP00000003682	ENSTNIP00000016422	Clock circadian regulator a.	Uncharacterized protein.	0.639
CLOCK	H3DCQ3_TETNG	ENSTNIP00000003682	ENSTNIP00000018296	Clock circadian regulator a.	Period circadian clock 2.	0.654
CLOCK	H3DDY3_TETNG	ENSTNIP00000003682	ENSTNIP00000018726	Clock circadian regulator a.	Aryl hydrocarbon receptor 1b.	0.544
CLOCK	H3DDY4_TETNG	ENSTNIP00000003682	ENSTNIP00000018727	Clock circadian regulator a.	Uncharacterized protein.	0.544
CLOCK	H3DHE3_TETNG	ENSTNIP00000003682	ENSTNIP00000019937	Clock circadian regulator a.	Neuronal PAS domain protein 4a.	0.639
CLOCK	H3DIF8_TETNG	ENSTNIP00000003682	ENSTNIP00000020302	Clock circadian regulator a.	Aryl hydrocarbon receptor 2.	0.544
CLOCK	H3DIY2_TETNG	ENSTNIP00000003682	ENSTNIP00000020476	Clock circadian regulator a.	Hypoxia inducible factor 1 subunit alpha.	0.433
CLOCK	H3DIY3_TETNG	ENSTNIP00000003682	ENSTNIP00000020477	Clock circadian regulator a.	Hypoxia inducible factor 1 subunit alpha a.	0.433
CLOCK	H3DRC2_TETNG	ENSTNIP00000003682	ENSTNIP00000023072	Clock circadian regulator a.	PAS domain-containing protein.	0.452
CLOCK	PER2	ENSTNIP00000003682	ENSTNIP00000017339	Clock circadian regulator a.	Period circadian regulator 2.	0.654