(19 nodes) SAP domain superfamily network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3DML2_TETNG	Myocardin related transcription factor Bb. (882 aa)
	H3DDE7_TETNG	Scaffold attachment factor B. (780 aa)
	H3DB28_TETNG	Ring finger protein 34a. (360 aa)
	H3CF37_TETNG	Myocardin related transcription factor Ab. (936 aa)
	H3CR72_TETNG	SAP domain-containing protein. (1163 aa)
	H3CR76_TETNG	SAP domain-containing protein. (112 aa)
	H3CSN6_TETNG	Protein inhibitor of activated STAT, 1b. (650 aa)
	H3CTD1_TETNG	Cell division cycle and apoptosis regulator 1. (1144 aa)
	H3CVB8_TETNG	SAFB-like, transcription modulator. (962 aa)
	H3CVY8_TETNG	Protein inhibitor of activated STAT, 1a. (673 aa)
	H3D1U1_TETNG	SAP domain-containing protein. (941 aa)
	H3D4G5_TETNG	SAP domain containing ribonucleoprotein. (217 aa)
	H3D565_TETNG	Exoribonuclease 1. (325 aa)
	H3D5V8_TETNG	Myocardin related transcription factor Ba. (964 aa)
	H3D5Y7_TETNG	X-ray repair complementing defective repair in Chinese hamster cells 6. (594 aa)
	H3D8K4_TETNG	Apoptotic chromatin condensation inducer 1b. (1251 aa)
	H3BYE8_TETNG	Si:ch211-107m4.1. (576 aa)
	H3C8R3_TETNG	Heterogeneous nuclear ribonucleoprotein Ub. (757 aa)
	H3CC54_TETNG	Protein inhibitor of activated STAT, 4a. (505 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CC54_TETNG	H3CSN6_TETNG	ENSTNIP00000005826	ENSTNIP00000011270	Protein inhibitor of activated STAT, 4a.	Protein inhibitor of activated STAT, 1b.	0.931
H3CC54_TETNG	H3D5Y7_TETNG	ENSTNIP00000005826	ENSTNIP00000015927	Protein inhibitor of activated STAT, 4a.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.642
H3CF37_TETNG	H3D1U1_TETNG	ENSTNIP00000006861	ENSTNIP00000014479	Myocardin related transcription factor Ab.	SAP domain-containing protein.	0.421
H3CSN6_TETNG	H3CC54_TETNG	ENSTNIP00000011270	ENSTNIP00000005826	Protein inhibitor of activated STAT, 1b.	Protein inhibitor of activated STAT, 4a.	0.931
H3CSN6_TETNG	H3D5Y7_TETNG	ENSTNIP00000011270	ENSTNIP00000015927	Protein inhibitor of activated STAT, 1b.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.515
H3CVY8_TETNG	H3D5Y7_TETNG	ENSTNIP00000012422	ENSTNIP00000015927	Protein inhibitor of activated STAT, 1a.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.515
H3D1U1_TETNG	H3CF37_TETNG	ENSTNIP00000014479	ENSTNIP00000006861	SAP domain-containing protein.	Myocardin related transcription factor Ab.	0.421
H3D5Y7_TETNG	H3CC54_TETNG	ENSTNIP00000015927	ENSTNIP00000005826	X-ray repair complementing defective repair in Chinese hamster cells 6.	Protein inhibitor of activated STAT, 4a.	0.642
H3D5Y7_TETNG	H3CSN6_TETNG	ENSTNIP00000015927	ENSTNIP00000011270	X-ray repair complementing defective repair in Chinese hamster cells 6.	Protein inhibitor of activated STAT, 1b.	0.515
H3D5Y7_TETNG	H3CVY8_TETNG	ENSTNIP00000015927	ENSTNIP00000012422	X-ray repair complementing defective repair in Chinese hamster cells 6.	Protein inhibitor of activated STAT, 1a.	0.515