26 items (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3D1J2_TETNG	Ring finger and CHY zinc finger domain containing 1. (282 aa)
	H3DER6_TETNG	Ubiquitin recognition factor in ER associated degradation 1. (309 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (603 aa)
	H3DFJ8_TETNG	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (613 aa)
	H3DLC8_TETNG	Replication protein A3. (122 aa)
	Q4RGY9_TETNG	Chromosome undetermined SCAF15083, whole genome shotgun sequence. (140 aa)
	H3DNX9_TETNG	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (529 aa)
	H3DD70_TETNG	Valosin containing protein; Belongs to the AAA ATPase family. (804 aa)
	H3DD39_TETNG	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	H3DPK5_TETNG	Si:dkey-24l11.2. (627 aa)
	Q4SDY0_TETNG	Chromosome undetermined SCAF14628, whole genome shotgun sequence. (357 aa)
	H3C0I6_TETNG	RPA_C domain-containing protein. (259 aa)
	H3C7U5_TETNG	SprT-like N-terminal domain. (474 aa)
	H3CD80_TETNG	RPA_C domain-containing protein. (253 aa)
	H3CHZ6_TETNG	AAA domain-containing protein. (220 aa)
	H3CIV0_TETNG	Uncharacterized protein. (718 aa)
	H3CJ79_TETNG	Replication factor C subunit 1. (1133 aa)
	H3CT84_TETNG	Polymerase (DNA directed), eta. (685 aa)
	H3CVX5_TETNG	Spermatogenesis associated 5-like 1. (770 aa)
	Q4SG11_TETNG	Chromosome 7 SCAF14601, whole genome shotgun sequence. (356 aa)
	Q4SF14_TETNG	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	H3DBW1_TETNG	Replication factor C (activator 1) 2. (353 aa)
	RCBTB1	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (536 aa)
	H3D5U1_TETNG	Methionine sulfoxide reductase B1b. (469 aa)
	H3D2U9_TETNG	NPL4 homolog, ubiquitin recognition factor. (607 aa)
	H3DDU4_TETNG	Replication factor C (activator 1) 5. (339 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C0I6_TETNG	H3C7U5_TETNG	ENSTNIP00000001752	ENSTNIP00000004317	RPA_C domain-containing protein.	SprT-like N-terminal domain.	0.578
H3C0I6_TETNG	H3CJ79_TETNG	ENSTNIP00000001752	ENSTNIP00000008308	RPA_C domain-containing protein.	Replication factor C subunit 1.	0.677
H3C0I6_TETNG	H3CT84_TETNG	ENSTNIP00000001752	ENSTNIP00000011468	RPA_C domain-containing protein.	Polymerase (DNA directed), eta.	0.569
H3C0I6_TETNG	H3D5U1_TETNG	ENSTNIP00000001752	ENSTNIP00000015881	RPA_C domain-containing protein.	Methionine sulfoxide reductase B1b.	0.748
H3C0I6_TETNG	H3DBW1_TETNG	ENSTNIP00000001752	ENSTNIP00000018004	RPA_C domain-containing protein.	Replication factor C (activator 1) 2.	0.857
H3C0I6_TETNG	H3DD39_TETNG	ENSTNIP00000001752	ENSTNIP00000018432	RPA_C domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.893
H3C0I6_TETNG	H3DD70_TETNG	ENSTNIP00000001752	ENSTNIP00000018463	RPA_C domain-containing protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.489
H3C0I6_TETNG	H3DDU4_TETNG	ENSTNIP00000001752	ENSTNIP00000018687	RPA_C domain-containing protein.	Replication factor C (activator 1) 5.	0.715
H3C0I6_TETNG	H3DER6_TETNG	ENSTNIP00000001752	ENSTNIP00000019009	RPA_C domain-containing protein.	Ubiquitin recognition factor in ER associated degradation 1.	0.549
H3C0I6_TETNG	H3DFJ8_TETNG	ENSTNIP00000001752	ENSTNIP00000019292	RPA_C domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.876
H3C0I6_TETNG	H3DLC8_TETNG	ENSTNIP00000001752	ENSTNIP00000021326	RPA_C domain-containing protein.	Replication protein A3.	0.934
H3C0I6_TETNG	Q4RGY9_TETNG	ENSTNIP00000001752	ENSTNIP00000021867	RPA_C domain-containing protein.	Chromosome undetermined SCAF15083, whole genome shotgun sequence.	0.522
H3C0I6_TETNG	Q4SDY0_TETNG	ENSTNIP00000001752	ENSTNIP00000013379	RPA_C domain-containing protein.	Chromosome undetermined SCAF14628, whole genome shotgun sequence.	0.784
H3C0I6_TETNG	Q4SF14_TETNG	ENSTNIP00000001752	ENSTNIP00000013085	RPA_C domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.513
H3C0I6_TETNG	Q4SG11_TETNG	ENSTNIP00000001752	ENSTNIP00000012810	RPA_C domain-containing protein.	Chromosome 7 SCAF14601, whole genome shotgun sequence.	0.795
H3C0I6_TETNG	RPA1	ENSTNIP00000001752	ENSTNIP00000019258	RPA_C domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.876
H3C7U5_TETNG	H3C0I6_TETNG	ENSTNIP00000004317	ENSTNIP00000001752	SprT-like N-terminal domain.	RPA_C domain-containing protein.	0.578
H3C7U5_TETNG	H3CD80_TETNG	ENSTNIP00000004317	ENSTNIP00000006203	SprT-like N-terminal domain.	RPA_C domain-containing protein.	0.578
H3C7U5_TETNG	H3CHZ6_TETNG	ENSTNIP00000004317	ENSTNIP00000007874	SprT-like N-terminal domain.	AAA domain-containing protein.	0.763
H3C7U5_TETNG	H3CIV0_TETNG	ENSTNIP00000004317	ENSTNIP00000008178	SprT-like N-terminal domain.	Uncharacterized protein.	0.763