(5 nodes) Calreticulin family network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3DQ83_TETNG	Uncharacterized protein. (186 aa)
	H3C225_TETNG	Calmegin. (463 aa)
	H3CCV8_TETNG	Uncharacterized protein. (173 aa)
	H3DBQ1_TETNG	Uncharacterized protein; Belongs to the calreticulin family. (78 aa)
	H3DDG9_TETNG	Calreticulin. (370 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C225_TETNG	H3DBQ1_TETNG	ENSTNIP00000002293	ENSTNIP00000017944	Calmegin.	Uncharacterized protein; Belongs to the calreticulin family.	0.851
H3C225_TETNG	H3DDG9_TETNG	ENSTNIP00000002293	ENSTNIP00000018562	Calmegin.	Calreticulin.	0.851
H3CCV8_TETNG	H3DBQ1_TETNG	ENSTNIP00000006081	ENSTNIP00000017944	Uncharacterized protein.	Uncharacterized protein; Belongs to the calreticulin family.	0.851
H3CCV8_TETNG	H3DDG9_TETNG	ENSTNIP00000006081	ENSTNIP00000018562	Uncharacterized protein.	Calreticulin.	0.851
H3CCV8_TETNG	H3DQ83_TETNG	ENSTNIP00000006081	ENSTNIP00000022682	Uncharacterized protein.	Uncharacterized protein.	0.895
H3DBQ1_TETNG	H3C225_TETNG	ENSTNIP00000017944	ENSTNIP00000002293	Uncharacterized protein; Belongs to the calreticulin family.	Calmegin.	0.851
H3DBQ1_TETNG	H3CCV8_TETNG	ENSTNIP00000017944	ENSTNIP00000006081	Uncharacterized protein; Belongs to the calreticulin family.	Uncharacterized protein.	0.851
H3DBQ1_TETNG	H3DDG9_TETNG	ENSTNIP00000017944	ENSTNIP00000018562	Uncharacterized protein; Belongs to the calreticulin family.	Calreticulin.	0.912
H3DBQ1_TETNG	H3DQ83_TETNG	ENSTNIP00000017944	ENSTNIP00000022682	Uncharacterized protein; Belongs to the calreticulin family.	Uncharacterized protein.	0.851
H3DDG9_TETNG	H3C225_TETNG	ENSTNIP00000018562	ENSTNIP00000002293	Calreticulin.	Calmegin.	0.851
H3DDG9_TETNG	H3CCV8_TETNG	ENSTNIP00000018562	ENSTNIP00000006081	Calreticulin.	Uncharacterized protein.	0.851
H3DDG9_TETNG	H3DBQ1_TETNG	ENSTNIP00000018562	ENSTNIP00000017944	Calreticulin.	Uncharacterized protein; Belongs to the calreticulin family.	0.912
H3DDG9_TETNG	H3DQ83_TETNG	ENSTNIP00000018562	ENSTNIP00000022682	Calreticulin.	Uncharacterized protein.	0.851
H3DQ83_TETNG	H3CCV8_TETNG	ENSTNIP00000022682	ENSTNIP00000006081	Uncharacterized protein.	Uncharacterized protein.	0.895
H3DQ83_TETNG	H3DBQ1_TETNG	ENSTNIP00000022682	ENSTNIP00000017944	Uncharacterized protein.	Uncharacterized protein; Belongs to the calreticulin family.	0.851
H3DQ83_TETNG	H3DDG9_TETNG	ENSTNIP00000022682	ENSTNIP00000018562	Uncharacterized protein.	Calreticulin.	0.851