(16 nodes) (2017) Ryanodine receptors are part of the myospryn complex in cardiac muscle. network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3CBC6_TETNG	Uncharacterized protein. (1795 aa)
	H3CEL6_TETNG	Lipolysis stimulated lipoprotein receptor. (293 aa)
	H3CRI0_TETNG	Glyceraldehyde-3-phosphate dehydrogenase. (360 aa)
	AP3B2	AP-3 complex subunit beta. (1081 aa)
	WHAMM	WASP homolog associated with actin, golgi membranes and microtubules. (776 aa)
	H3CWJ1_TETNG	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (470 aa)
	H3CYL5_TETNG	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily. (351 aa)
	H3D3P8_TETNG	Uncharacterized protein; Belongs to the protein kinase superfamily. (339 aa)
	H3D6Y7_TETNG	Dystrophin. (637 aa)
	Q4S0R6_TETNG	Thioredoxin; Belongs to the thioredoxin family. (109 aa)
	H3D8L7_TETNG	Thioredoxin; Belongs to the thioredoxin family. (108 aa)
	H3D8X9_TETNG	Midline 1. (672 aa)
	SRL	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (490 aa)
	MID1	Uncharacterized protein. (684 aa)
	JMY	Junction mediating and regulatory protein, p53 cofactor. (861 aa)
	TTN	Titin, tandem duplicate 2. (18947 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP3B2	H3D8X9_TETNG	ENSTNIP00000011283	ENSTNIP00000016970	AP-3 complex subunit beta.	Midline 1.	0.404
AP3B2	JMY	ENSTNIP00000011283	ENSTNIP00000018482	AP-3 complex subunit beta.	Junction mediating and regulatory protein, p53 cofactor.	0.600
AP3B2	MID1	ENSTNIP00000011283	ENSTNIP00000017575	AP-3 complex subunit beta.	Uncharacterized protein.	0.404
AP3B2	WHAMM	ENSTNIP00000011283	ENSTNIP00000012363	AP-3 complex subunit beta.	WASP homolog associated with actin, golgi membranes and microtubules.	0.600
H3CBC6_TETNG	H3CYL5_TETNG	ENSTNIP00000005548	ENSTNIP00000013350	Uncharacterized protein.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.409
H3CBC6_TETNG	H3D3P8_TETNG	ENSTNIP00000005548	ENSTNIP00000015136	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.409
H3CBC6_TETNG	H3D6Y7_TETNG	ENSTNIP00000005548	ENSTNIP00000016278	Uncharacterized protein.	Dystrophin.	0.649
H3CEL6_TETNG	H3CWJ1_TETNG	ENSTNIP00000006690	ENSTNIP00000012625	Lipolysis stimulated lipoprotein receptor.	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.478
H3CEL6_TETNG	SRL	ENSTNIP00000006690	ENSTNIP00000017104	Lipolysis stimulated lipoprotein receptor.	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.478
H3CRI0_TETNG	H3D8L7_TETNG	ENSTNIP00000010864	ENSTNIP00000016858	Glyceraldehyde-3-phosphate dehydrogenase.	Thioredoxin; Belongs to the thioredoxin family.	0.435
H3CRI0_TETNG	Q4S0R6_TETNG	ENSTNIP00000010864	ENSTNIP00000016857	Glyceraldehyde-3-phosphate dehydrogenase.	Thioredoxin; Belongs to the thioredoxin family.	0.435
H3CWJ1_TETNG	H3CEL6_TETNG	ENSTNIP00000012625	ENSTNIP00000006690	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Lipolysis stimulated lipoprotein receptor.	0.478
H3CWJ1_TETNG	H3D8L7_TETNG	ENSTNIP00000012625	ENSTNIP00000016858	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Thioredoxin; Belongs to the thioredoxin family.	0.403
H3CWJ1_TETNG	Q4S0R6_TETNG	ENSTNIP00000012625	ENSTNIP00000016857	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Thioredoxin; Belongs to the thioredoxin family.	0.403
H3CYL5_TETNG	H3CBC6_TETNG	ENSTNIP00000013350	ENSTNIP00000005548	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.409
H3CYL5_TETNG	H3D3P8_TETNG	ENSTNIP00000013350	ENSTNIP00000015136	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
H3D3P8_TETNG	H3CBC6_TETNG	ENSTNIP00000015136	ENSTNIP00000005548	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.409
H3D3P8_TETNG	H3CYL5_TETNG	ENSTNIP00000015136	ENSTNIP00000013350	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.900
H3D6Y7_TETNG	H3CBC6_TETNG	ENSTNIP00000016278	ENSTNIP00000005548	Dystrophin.	Uncharacterized protein.	0.649
H3D6Y7_TETNG	TTN	ENSTNIP00000016278	ENSTNIP00000022587	Dystrophin.	Titin, tandem duplicate 2.	0.649