(5 nodes) PCI/PINT associated module network (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3CVX1_TETNG	COP9 signalosome subunit 2. (444 aa)
	PSMD11	PCI domain-containing protein. (422 aa)
	H3CKM6_TETNG	Proteasome 26S subunit, non-ATPase 11b. (422 aa)
	H3CLZ4_TETNG	Proteasome 26S subunit, non-ATPase 3. (518 aa)
	H3CM80_TETNG	PCI domain containing 2. (405 aa)

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CKM6_TETNG	H3CLZ4_TETNG	ENSTNIP00000008805	ENSTNIP00000009274	Proteasome 26S subunit, non-ATPase 11b.	Proteasome 26S subunit, non-ATPase 3.	0.983
H3CLZ4_TETNG	H3CKM6_TETNG	ENSTNIP00000009274	ENSTNIP00000008805	Proteasome 26S subunit, non-ATPase 3.	Proteasome 26S subunit, non-ATPase 11b.	0.983
H3CLZ4_TETNG	H3CM80_TETNG	ENSTNIP00000009274	ENSTNIP00000009361	Proteasome 26S subunit, non-ATPase 3.	PCI domain containing 2.	0.592
H3CLZ4_TETNG	PSMD11	ENSTNIP00000009274	ENSTNIP00000014099	Proteasome 26S subunit, non-ATPase 3.	PCI domain-containing protein.	0.983
H3CM80_TETNG	H3CLZ4_TETNG	ENSTNIP00000009361	ENSTNIP00000009274	PCI domain containing 2.	Proteasome 26S subunit, non-ATPase 3.	0.592
PSMD11	H3CLZ4_TETNG	ENSTNIP00000014099	ENSTNIP00000009274	PCI domain-containing protein.	Proteasome 26S subunit, non-ATPase 3.	0.983