40 items (Botrytis cinerea T4) - STRING interaction network

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proteins of unknown 3D structure

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Your Input:
	G2XWP6_BOTF4	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (121 aa)
	G2XZ74_BOTF4	Similar to transcription initiation factor IIF subunit alpha. (721 aa)
	G2XSR8_BOTF4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1742 aa)
	G2XSQ8_BOTF4	Similar to RNA polymerase II transcription factor. (613 aa)
	G2XQS1_BOTF4	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1081 aa)
	G2XUK9_BOTF4	Similar to transcription factor TFIIH complex subunit Tfb5. (71 aa)
	G2Y1D2_BOTF4	Similar to DNA-directed RNA polymerase II subunit RPB11. (125 aa)
	G2Y107_BOTF4	Uncharacterized protein. (399 aa)
	G2XZW4_BOTF4	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (471 aa)
	G2XZP4_BOTF4	Similar to RNA polymerase II transcription factor B subunit 3. (367 aa)
	G2XTL6_BOTF4	Similar to RNA polymerase II transcription factor B subunit 4. (358 aa)
	G2YW94_BOTF4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	G2YS02_BOTF4	Similar to transcription elongation factor b polypeptide 1; Belongs to the SKP1 family. (104 aa)
	G2YRR9_BOTF4	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (555 aa)
	G2YRH3_BOTF4	Uncharacterized protein. (807 aa)
	G2YRH2_BOTF4	Similar to cyclin ccl1. (380 aa)
	G2YRD3_BOTF4	Similar to DNA-directed RNA polymerase I. (163 aa)
	G2YPL6_BOTF4	Similar to transcription elongation factor s-ii. (301 aa)
	G2YNL4_BOTF4	Similar to transcription initiation factor iif. (364 aa)
	G2YNJ5_BOTF4	Uncharacterized protein. (570 aa)
	G2YKM0_BOTF4	Similar to metallothionein-I gene transcription activator. (78 aa)
	G2YKB4_BOTF4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
	G2YIC2_BOTF4	Similar to protein kinase. (585 aa)
	G2YFT6_BOTF4	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (832 aa)
	G2YFR7_BOTF4	RPOL4c domain-containing protein. (146 aa)
	G2YBP7_BOTF4	Similar to FACT complex subunit spt16. (1031 aa)
	G2YA26_BOTF4	Similar to PHD finger domain protein. (821 aa)
	G2Y580_BOTF4	Uncharacterized protein. (157 aa)
	G2Y4Q1_BOTF4	Similar to TPR domain-containing protein. (401 aa)
	G2Y423_BOTF4	Similar to DNA-directed RNA polymerase II subunit rpb7. (172 aa)
	G2Y3Q1_BOTF4	Similar to TFIIH basal transcription factor complex helicase XPB subunit. (845 aa)
	G2Y3K4_BOTF4	Similar to protein kinase. (1071 aa)
	G2Y3D6_BOTF4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (478 aa)
	G2Y3D0_BOTF4	Uncharacterized protein. (629 aa)
	G2Y372_BOTF4	CYCLIN domain-containing protein; Belongs to the cyclin family. (423 aa)
	G2Y2M6_BOTF4	Similar to DNA repair helicase RAD3. (770 aa)
	G2Y229_BOTF4	Similar to DNA-directed RNA polymerases I/II/III subunit. (68 aa)
	G2Y1K6_BOTF4	Similar to serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (400 aa)
	G2XV39_BOTF4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	G2XVJ7_BOTF4	Similar to DNA-directed RNA polymerase II subunit RPB3. (336 aa)

Your Current Organism:

Botrytis cinerea T4

NCBI taxonomy Id: 999810
Other names: B. cinerea T4, Botryotinia fuckeliana T4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G2XQS1_BOTF4	G2XSQ8_BOTF4	G2XQS1	G2XSQ8	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to RNA polymerase II transcription factor.	0.826
G2XQS1_BOTF4	G2XSR8_BOTF4	G2XQS1	G2XSR8	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
G2XQS1_BOTF4	G2XTL6_BOTF4	G2XQS1	G2XTL6	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to RNA polymerase II transcription factor B subunit 4.	0.732
G2XQS1_BOTF4	G2XV39_BOTF4	G2XQS1	G2XV39	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
G2XQS1_BOTF4	G2XVJ7_BOTF4	G2XQS1	G2XVJ7	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to DNA-directed RNA polymerase II subunit RPB3.	0.996
G2XQS1_BOTF4	G2XWP6_BOTF4	G2XQS1	G2XWP6	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.998
G2XQS1_BOTF4	G2XZ74_BOTF4	G2XQS1	G2XZ74	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to transcription initiation factor IIF subunit alpha.	0.790
G2XQS1_BOTF4	G2XZP4_BOTF4	G2XQS1	G2XZP4	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to RNA polymerase II transcription factor B subunit 3.	0.744
G2XQS1_BOTF4	G2XZW4_BOTF4	G2XQS1	G2XZW4	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.773
G2XQS1_BOTF4	G2Y107_BOTF4	G2XQS1	G2Y107	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Uncharacterized protein.	0.712
G2XQS1_BOTF4	G2Y1D2_BOTF4	G2XQS1	G2Y1D2	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to DNA-directed RNA polymerase II subunit RPB11.	0.994
G2XQS1_BOTF4	G2Y1K6_BOTF4	G2XQS1	G2Y1K6	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	0.889
G2XQS1_BOTF4	G2Y229_BOTF4	G2XQS1	G2Y229	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to DNA-directed RNA polymerases I/II/III subunit.	0.985
G2XQS1_BOTF4	G2Y372_BOTF4	G2XQS1	G2Y372	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.855
G2XQS1_BOTF4	G2Y3D0_BOTF4	G2XQS1	G2Y3D0	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Uncharacterized protein.	0.820
G2XQS1_BOTF4	G2Y3K4_BOTF4	G2XQS1	G2Y3K4	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to protein kinase.	0.935
G2XQS1_BOTF4	G2Y423_BOTF4	G2XQS1	G2Y423	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to DNA-directed RNA polymerase II subunit rpb7.	0.996
G2XQS1_BOTF4	G2Y580_BOTF4	G2XQS1	G2Y580	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Uncharacterized protein.	0.888
G2XQS1_BOTF4	G2YA26_BOTF4	G2XQS1	G2YA26	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to PHD finger domain protein.	0.464
G2XQS1_BOTF4	G2YBP7_BOTF4	G2XQS1	G2YBP7	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	Similar to FACT complex subunit spt16.	0.990