(66 nodes) T-tubule network (Urocitellus parryii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PPP3CB	Protein phosphatase 3 catalytic subunit beta. (552 aa)
	EDNRA	Endothelin receptor type A. (427 aa)
	CACNG1	Calcium voltage-gated channel auxiliary subunit gamma 1. (224 aa)
	CACNG4	Calcium voltage-gated channel auxiliary subunit gamma 4. (327 aa)
	CACNG7	Calcium voltage-gated channel auxiliary subunit gamma 7. (275 aa)
	CACNG8	Calcium voltage-gated channel auxiliary subunit gamma 8. (415 aa)
	CACNG6	Calcium voltage-gated channel auxiliary subunit gamma 6. (261 aa)
	AKAP6	A-kinase anchoring protein 6. (2319 aa)
	VDR	Vitamin D receptor. (423 aa)
	SLC8A1	Solute carrier family 8 member A1. (940 aa)
	CLTC	Clathrin heavy chain. (1682 aa)
	STAC	SH3 and cysteine rich domain. (402 aa)
	CACNB2	Calcium voltage-gated channel auxiliary subunit beta 2. (655 aa)
	BIN1	Bridging integrator 1. (588 aa)
	KCNJ11	Potassium inwardly rectifying channel subfamily J member 11. (390 aa)
	CACNA2D1	Calcium voltage-gated channel auxiliary subunit alpha2delta 1. (1103 aa)
	NOS1	Nitric oxide synthase 1. (1468 aa)
	CACNB1	Calcium voltage-gated channel auxiliary subunit beta 1. (643 aa)
	DYSF	Dysferlin. (2136 aa)
	ATP2B4	ATPase plasma membrane Ca2+ transporting 4. (1205 aa)
	KCNJ3	Potassium inwardly rectifying channel subfamily J member 3. (499 aa)
	CACNB3	Calcium voltage-gated channel auxiliary subunit beta 3. (484 aa)
	STBD1	Starch binding domain 1. (348 aa)
	ENSUPAP00010012322	annotation not available (378 aa)
	CACNA1S	Calcium voltage-gated channel subunit alpha1 S. (1875 aa)
	IGF1R	Insulin like growth factor 1 receptor. (1367 aa)
	SCN5A	Sodium voltage-gated channel alpha subunit 5. (2010 aa)
	RYR1	Ryanodine receptor 1. (5060 aa)
	SCN1B	Sodium voltage-gated channel beta subunit 1. (218 aa)
	ENSUPAP00010013507	annotation not available (173 aa)
	ATP1B1	ATPase Na+/K+ transporting subunit beta 1. (284 aa)
	CASQ1	Calsequestrin 1. (404 aa)
	ENSUPAP00010014962	annotation not available (155 aa)
	ASB3	Ankyrin repeat and SOCS box containing 3. (563 aa)
	KCNN2	Potassium calcium-activated channel subfamily N member 2. (851 aa)
	AQP4	Aquaporin 4. (323 aa)
	ENSUPAP00010016983	annotation not available (375 aa)
	TGFB3	Transforming growth factor beta 3. (455 aa)
	CDH2	Cadherin 2. (910 aa)
	CAPN3	Calpain 3. (856 aa)
	CAMK2D	Calcium/calmodulin dependent protein kinase II delta. (533 aa)
	ENSUPAP00010017838	annotation not available (536 aa)
	ANK2	Ankyrin 2. (3935 aa)
	SLC2A4	Solute carrier family 2 member 4. (514 aa)
	ENSUPAP00010018428	annotation not available (1985 aa)
	KCND2	Potassium voltage-gated channel subfamily D member 2. (630 aa)
	SRI	Sorcin. (198 aa)
	SLC30A1	Solute carrier family 30 member 1. (509 aa)
	ASB15	Ankyrin repeat and SOCS box containing 15. (594 aa)
	EZR	Ezrin. (586 aa)
	FER1L5	Fer-1 like family member 5. (2060 aa)
	ANKRD39	Ankyrin repeat domain 39. (183 aa)
	ABCC9	ATP binding cassette subfamily C member 9. (1549 aa)
	ENSUPAP00010023739	annotation not available (744 aa)
	KCNJ5	Potassium inwardly rectifying channel subfamily J member 5. (419 aa)
	ENSUPAP00010024590	annotation not available (521 aa)
	CACNA1C	Calcium voltage-gated channel subunit alpha1 C. (2192 aa)
	SCN1A	Sodium voltage-gated channel alpha subunit 1. (2009 aa)
	SCN2A	Sodium voltage-gated channel alpha subunit 2. (2006 aa)
	PRKCE	Protein kinase C epsilon. (737 aa)
	SLC9A1	Solute carrier family 9 member A1. (810 aa)
	RTN2	Reticulon 2. (469 aa)
	ATP1A1	ATPase Na+/K+ transporting subunit alpha 1. (1028 aa)
	PRKAR2A	Protein kinase cAMP-dependent type II regulatory subunit alpha. (399 aa)
	CAV3	Caveolin 3. (151 aa)
	MSN	Moesin. (577 aa)

Your Current Organism:

Urocitellus parryii

NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCC9	ENSUPAP00010017838	ENSUPAP00010023095	ENSUPAP00010017838	ATP binding cassette subfamily C member 9.	annotation not available	0.779
ABCC9	KCNJ11	ENSUPAP00010023095	ENSUPAP00010008419	ATP binding cassette subfamily C member 9.	Potassium inwardly rectifying channel subfamily J member 11.	0.997
ABCC9	KCNJ3	ENSUPAP00010023095	ENSUPAP00010009728	ATP binding cassette subfamily C member 9.	Potassium inwardly rectifying channel subfamily J member 3.	0.783
ABCC9	KCNJ5	ENSUPAP00010023095	ENSUPAP00010024257	ATP binding cassette subfamily C member 9.	Potassium inwardly rectifying channel subfamily J member 5.	0.784
AKAP6	ENSUPAP00010024590	ENSUPAP00010002314	ENSUPAP00010024590	A-kinase anchoring protein 6.	annotation not available	0.544
AKAP6	RYR1	ENSUPAP00010002314	ENSUPAP00010013069	A-kinase anchoring protein 6.	Ryanodine receptor 1.	0.548
ANK2	CACNA1C	ENSUPAP00010017909	ENSUPAP00010024931	Ankyrin 2.	Calcium voltage-gated channel subunit alpha1 C.	0.419
ANK2	KCNJ11	ENSUPAP00010017909	ENSUPAP00010008419	Ankyrin 2.	Potassium inwardly rectifying channel subfamily J member 11.	0.432
ANK2	PPP3CB	ENSUPAP00010017909	ENSUPAP00010013529	Ankyrin 2.	Protein phosphatase 3 catalytic subunit beta.	0.465
ANK2	SCN1B	ENSUPAP00010017909	ENSUPAP00010013421	Ankyrin 2.	Sodium voltage-gated channel beta subunit 1.	0.414
ANK2	SCN2A	ENSUPAP00010017909	ENSUPAP00010025564	Ankyrin 2.	Sodium voltage-gated channel alpha subunit 2.	0.516
ANK2	SCN5A	ENSUPAP00010017909	ENSUPAP00010013015	Ankyrin 2.	Sodium voltage-gated channel alpha subunit 5.	0.591
ANK2	SLC8A1	ENSUPAP00010017909	ENSUPAP00010004377	Ankyrin 2.	Solute carrier family 8 member A1.	0.412
ANKRD39	PPP3CB	ENSUPAP00010022535	ENSUPAP00010013529	Ankyrin repeat domain 39.	Protein phosphatase 3 catalytic subunit beta.	0.461
AQP4	ENSUPAP00010018428	ENSUPAP00010016173	ENSUPAP00010018428	Aquaporin 4.	annotation not available	0.443
AQP4	PRKAR2A	ENSUPAP00010016173	ENSUPAP00010028929	Aquaporin 4.	Protein kinase cAMP-dependent type II regulatory subunit alpha.	0.660
ASB15	PPP3CB	ENSUPAP00010021731	ENSUPAP00010013529	Ankyrin repeat and SOCS box containing 15.	Protein phosphatase 3 catalytic subunit beta.	0.461
ASB3	PPP3CB	ENSUPAP00010015329	ENSUPAP00010013529	Ankyrin repeat and SOCS box containing 3.	Protein phosphatase 3 catalytic subunit beta.	0.461
ATP1A1	ATP1B1	ENSUPAP00010028542	ENSUPAP00010013627	ATPase Na+/K+ transporting subunit alpha 1.	ATPase Na+/K+ transporting subunit beta 1.	0.995
ATP1A1	CASQ1	ENSUPAP00010028542	ENSUPAP00010013897	ATPase Na+/K+ transporting subunit alpha 1.	Calsequestrin 1.	0.601