casA protein (Leptospira alexanderi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

casA

Unannotated protein. (533 aa)

Predicted Functional Partners:

cas5e

0.998

cas7e

0.998

casB

0.998

cas3

0.994

cas1e

0.906

V6IA84_9LEPT

0.902

cas2e

0.836

GCA_002009845_03146

0.491

Your Current Organism:

Leptospira alexanderi

NCBI taxonomy Id: 100053
Other names: ATCC 700520, L. alexanderi, Leptospira genomosp. 2, Leptospira genomospecies 2, Leptospira genospecies 2, strain L 60

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_002009845_03146	cas3	GCA_002009845_03146	GCA_002009845_03145	Unannotated protein.	Unannotated protein.	0.497
GCA_002009845_03146	cas5e	GCA_002009845_03146	GCA_002009845_03141	Unannotated protein.	Unannotated protein.	0.491
GCA_002009845_03146	cas7e	GCA_002009845_03146	GCA_002009845_03142	Unannotated protein.	Unannotated protein.	0.491
GCA_002009845_03146	casA	GCA_002009845_03146	GCA_002009845_03144	Unannotated protein.	Unannotated protein.	0.491
GCA_002009845_03146	casB	GCA_002009845_03146	GCA_002009845_03143	Unannotated protein.	Unannotated protein.	0.491
V6IA84_9LEPT	cas1e	GCA_002009845_03140	GCA_002009845_03139	Unannotated protein.	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.839
V6IA84_9LEPT	cas2e	GCA_002009845_03140	GCA_002009845_03138	Unannotated protein.	Unannotated protein.	0.841
V6IA84_9LEPT	cas3	GCA_002009845_03140	GCA_002009845_03145	Unannotated protein.	Unannotated protein.	0.905
V6IA84_9LEPT	cas5e	GCA_002009845_03140	GCA_002009845_03141	Unannotated protein.	Unannotated protein.	0.957
V6IA84_9LEPT	cas7e	GCA_002009845_03140	GCA_002009845_03142	Unannotated protein.	Unannotated protein.	0.917
V6IA84_9LEPT	casA	GCA_002009845_03140	GCA_002009845_03144	Unannotated protein.	Unannotated protein.	0.902
V6IA84_9LEPT	casB	GCA_002009845_03140	GCA_002009845_03143	Unannotated protein.	Unannotated protein.	0.898
cas1e	V6IA84_9LEPT	GCA_002009845_03139	GCA_002009845_03140	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.839
cas1e	cas2e	GCA_002009845_03139	GCA_002009845_03138	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.999
cas1e	cas3	GCA_002009845_03139	GCA_002009845_03145	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.841
cas1e	cas5e	GCA_002009845_03139	GCA_002009845_03141	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.870
cas1e	cas7e	GCA_002009845_03139	GCA_002009845_03142	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.895
cas1e	casA	GCA_002009845_03139	GCA_002009845_03144	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.906
cas1e	casB	GCA_002009845_03139	GCA_002009845_03143	Unannotated protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	Unannotated protein.	0.841
cas2e	V6IA84_9LEPT	GCA_002009845_03138	GCA_002009845_03140	Unannotated protein.	Unannotated protein.	0.841