STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GY21_12725Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)    
Predicted Functional Partners:
GY21_12720
DNA topoisomerase IV subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
GY21_10610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
GY21_19520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
GY21_06410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
GY21_10745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
GY21_04515
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.
  
     0.482
GY21_10785
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
GY21_12675
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.481
GY21_12360
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
GY21_01790
Translocase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.430
Your Current Organism:
Cryobacterium roopkundense
NCBI taxonomy Id: 1001240
Other names: C. roopkundense, Cryobacterium roopkundense Reddy et al. 2010, DSM 21065, JCM 15131, strain RuGl7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.