Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0958 | MDS_3410 | MDS_0958 | MDS_3410 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, TyrR. | 0.773 |
MDS_1956 | MDS_3410 | MDS_1956 | MDS_3410 | Prephenate dehydratase. | Transcriptional regulator, TyrR. | 0.405 |
MDS_1956 | MDS_3411 | MDS_1956 | MDS_3411 | Prephenate dehydratase. | Phenylalanine 4-monooxygenase. | 0.937 |
MDS_1956 | MDS_3412 | MDS_1956 | MDS_3412 | Prephenate dehydratase. | Pterin-4-alpha-carbinolamine dehydratase. | 0.443 |
MDS_1956 | MDS_3413 | MDS_1956 | MDS_3413 | Prephenate dehydratase. | Aromatic amino acid aminotransferase. | 0.951 |
MDS_1956 | gcvP | MDS_1956 | MDS_1374 | Prephenate dehydratase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.459 |
MDS_3410 | MDS_0958 | MDS_3410 | MDS_0958 | Transcriptional regulator, TyrR. | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.773 |
MDS_3410 | MDS_1956 | MDS_3410 | MDS_1956 | Transcriptional regulator, TyrR. | Prephenate dehydratase. | 0.405 |
MDS_3410 | MDS_3411 | MDS_3410 | MDS_3411 | Transcriptional regulator, TyrR. | Phenylalanine 4-monooxygenase. | 0.614 |
MDS_3410 | MDS_3412 | MDS_3410 | MDS_3412 | Transcriptional regulator, TyrR. | Pterin-4-alpha-carbinolamine dehydratase. | 0.530 |
MDS_3410 | MDS_3413 | MDS_3410 | MDS_3413 | Transcriptional regulator, TyrR. | Aromatic amino acid aminotransferase. | 0.472 |
MDS_3410 | gcvP | MDS_3410 | MDS_1374 | Transcriptional regulator, TyrR. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.460 |
MDS_3411 | MDS_1956 | MDS_3411 | MDS_1956 | Phenylalanine 4-monooxygenase. | Prephenate dehydratase. | 0.937 |
MDS_3411 | MDS_3410 | MDS_3411 | MDS_3410 | Phenylalanine 4-monooxygenase. | Transcriptional regulator, TyrR. | 0.614 |
MDS_3411 | MDS_3412 | MDS_3411 | MDS_3412 | Phenylalanine 4-monooxygenase. | Pterin-4-alpha-carbinolamine dehydratase. | 0.995 |
MDS_3411 | MDS_3413 | MDS_3411 | MDS_3413 | Phenylalanine 4-monooxygenase. | Aromatic amino acid aminotransferase. | 0.992 |
MDS_3412 | MDS_1956 | MDS_3412 | MDS_1956 | Pterin-4-alpha-carbinolamine dehydratase. | Prephenate dehydratase. | 0.443 |
MDS_3412 | MDS_3410 | MDS_3412 | MDS_3410 | Pterin-4-alpha-carbinolamine dehydratase. | Transcriptional regulator, TyrR. | 0.530 |
MDS_3412 | MDS_3411 | MDS_3412 | MDS_3411 | Pterin-4-alpha-carbinolamine dehydratase. | Phenylalanine 4-monooxygenase. | 0.995 |
MDS_3412 | MDS_3413 | MDS_3412 | MDS_3413 | Pterin-4-alpha-carbinolamine dehydratase. | Aromatic amino acid aminotransferase. | 0.965 |
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