STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2WP54SRP54 domain-containing protein. (660 aa)    
Predicted Functional Partners:
A0A1Y2X9P0
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
 
0.998
A0A1Y2WM99
Uncharacterized protein.
   
 0.996
A0A1Y2XA57
Plug_translocon domain-containing protein.
   
 0.983
A0A1Y2WWJ7
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 0.966
A0A1Y2XF66
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.
   
 0.961
A0A1Y2XG84
Ribosomal_L23eN domain-containing protein.
   
 
 0.957
A0A1Y2WZB3
Ribosomal_L18_c domain-containing protein.
   
 
 0.952
A0A1Y2X4U3
Uncharacterized protein.
   
 
 0.949
A0A1Y2XG60
SRP9-21 domain-containing protein.
   
 0.939
A0A1Y2WRU2
Ribosomal_L18e/L15P domain-containing protein.
  
 
 0.931
Your Current Organism:
Daldinia sp. EC12
NCBI taxonomy Id: 1001832
Other names: D. sp. EC12
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