STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2X4A4Uncharacterized protein. (617 aa)    
Predicted Functional Partners:
A0A1Y2X2P8
Uncharacterized protein.
   
  
 0.712
A0A1Y2XDR3
WD_REPEATS_REGION domain-containing protein.
   
  
 0.663
A0A1Y2XG27
Uncharacterized protein.
   
    0.594
A0A1Y2WWJ5
WD_REPEATS_REGION domain-containing protein.
   
    0.593
A0A1Y2X266
PUM-HD domain-containing protein.
   
    0.586
A0A1Y2WTM6
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
    0.584
A0A1Y2WLG2
WD_REPEATS_REGION domain-containing protein.
   
    0.574
A0A1Y2XD91
WD_REPEATS_REGION domain-containing protein.
   
    0.574
A0A1Y2WV88
Bms1-type G domain-containing protein.
   
    0.562
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
    0.557
Your Current Organism:
Daldinia sp. EC12
NCBI taxonomy Id: 1001832
Other names: D. sp. EC12
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